Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01368 ATGTGTTGCAGCTCTTGGAGTTTTGTAGAGTGTTTGGAAAGTTGGTGTGAAAATGAGATGAAACTGCTTCACTCAAGTCTCCTACTCCAAATGGACGGTAGATTGAACTTTGAGGATGTTGTGGCCAGTTCTTCAAAAGGGAACCGGAAAATCTTGTTATCAAATGTGATTGGGATGTTTACTGCTGTTGGAACAGAGAGGGAGCTAGAGAAAGCTGGTAAGAAAACCAAAATGAATGTCATCCTTATTGAAGCTGATGGTTTGCAACTGGAGTGTACTTTATTTGGTCAATATGTTGATATGTTAAATGCATTTCTGGCCTCTGGAGAGGATCAACATGTTGTCATTGCTTTGCATTATTGCAAAGTGAAGACCTTCCAAGATAAAGTTTCTATTCAAAACTGTATGAACTGTACCAAGATTATCTTTAATTGTGATGGTGAAGATGCAACCAAGTTGAAAAAAATGATGTGGGATAATACTGAATCTCCTTCTCAAGCTCTTACCCAACTTTCTGCTTCTTCTAAAGTTAGCTTAGAAGATGATTTCATTAAGCTGCATCCTAGGAGTTCAATTGAAGGTCTAAAAGATTTTAAACAGGAAAGTACTTTTGTAGTAAAAGCTACTATCAAACATGTGCTAGATCATGATGATTGGTGGTATACAGCATGTATCTGCAACAAAGCAGTTTATCCTGATTCCAAAATGTTTTTTTGTGAAAAGTGTAACAAGCATGTCATTAAGGTTACACCTAGGTTTAAACTGAAACTTCGTGTAATTGATGCTACGGATTCTACAACTTTTGTTGTATTTGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTCTGACATTCTTGAATTGCAAGACAAGAACACTGCTGCTGGAGACTTGCCTAAAGAGTTTGAAGTCCTAATTGATAAGACCTATCTCTTCAAAGTTGAGTGCAAGAATGATTATAATACCAAATTTGAACAATCATTCAGAGTTAAAAAAGTTTGCATGGATGAAAAAGTAATTGAAAGCTTTTCTGATGTTGAAATTAAGTCTTTGGATCTATACTCTGCAAATGAAGAAGAAACCAAATTAAATGAGCCAACAAATCAACTCTCACCTGATTCCATTGCAGAGGATTTGTTGATCAAATTCACAGAAGAATCAAATGATCTTGAGACTCTAAGTGATCATTTGAACAATATAGTATCAAGCCATGTTCCTCCCGAAGAATCCTTGAAAAATAAAAATGTAATTGATGTTCAAATTCATGAGTTAACCCGCAAAGAATCATCTCATCTGGACAATCTTGATTTGGGTACTCAACCACCTGTTCCAATACTTAAAAGACAAAGTCGATCTATGGTTCAAGAAAACAAGAAGATTCCAGTGAAGATGTTGAAGAAGAATATAAAGATTGAAAAGTGA 1425 0.3544 MCCSSWSFVECLESWCENEMKLLHSSLLLQMDGRLNFEDVVASSSKGNRKILLSNVIGMFTAVGTERELEKAGKKTKMNVILIEADGLQLECTLFGQYVDMLNAFLASGEDQHVVIALHYCKVKTFQDKVSIQNCMNCTKIIFNCDGEDATKLKKMMWDNTESPSQALTQLSASSKVSLEDDFIKLHPRSSIEGLKDFKQESTFVVKATIKHVLDHDDWWYTACICNKAVYPDSKMFFCEKCNKHVIKVTPRFKLKLRVIDATDSTTFVVFDRDASAMLKKSCSDILELQDKNTAAGDLPKEFEVLIDKTYLFKVECKNDYNTKFEQSFRVKKVCMDEKVIESFSDVEIKSLDLYSANEEETKLNEPTNQLSPDSIAEDLLIKFTEESNDLETLSDHLNNIVSSHVPPEESLKNKNVIDVQIHELTRKESSHLDNLDLGTQPPVPILKRQSRSMVQENKKIPVKMLKKNIKIEK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01368 474 CDD RPA1_DBD_C 204 334 IPR047192 -
Viun4g01368 474 Pfam Replication factor-A C terminal domain 204 335 IPR013955 -
Viun4g01368 474 SUPERFAMILY Nucleic acid-binding proteins 53 158 IPR012340 -
Viun4g01368 474 Gene3D - 35 166 IPR012340 -
Viun4g01368 474 CDD RPA1_DBD_B_like 55 149 - -
Viun4g01368 474 PANTHER OS03G0429900 PROTEIN 75 335 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun4g01368 474 Gene3D - 176 344 IPR012340 -
Viun4g01368 474 SUPERFAMILY Nucleic acid-binding proteins 193 334 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01368 Viun-Chr4 22335225 22339447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01368 111 334 Core DNA Replication Machinery Family AT5G08020 24.255 2.65e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01368 - - vun:114180582 719.539