Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01325 ATGTCTGCTTTGCAAAAACAAACCCAGTCATTACAGGAACTGAACCCGGAGAAGGAAAGCTGGAATATTGTTGCAAGAGTGGTAAGGTTATGGTTTGTAGAAGATTACACAAAAGGAAAATCTCCATTTTCCATGGAGATTGTTCTTCAAGACAAAGAGGGTGTCCTAATCCATGCGTCTGTTAGACGCACACTGATATACAAATTCCAATCTAAAATCAAAGAGGATAAGGTTTACTACATTCAGTCTTTTAGTGTTTCATGTAATGGTGGTTCTTATAGAACTACAAATCATGCCTATAAGATCAACTTCCAATTTGGAACCAAGGTCAATTTGGTAGAATCTACCTTAGTTCCCAATATTAGTACTGCATACACCCCTTTTTCAACCATCCAAGCACCTGGTTTTGACACAGATTACTTAGTTAATGTCATTGGAATGTTGACTGGTGTTGGAACACAGAGAGAGTTAGAGAAAGGTGGTAAGAAGACCAAGATGAATGTCATCCTTATTCAATCTGATGGTTATCGACTGGAGTGTACTTTATTTGGTCAATATGTTGATATGTTAAATGCATTTCTTGCGTCTGAAGAGGATCAATATGTTGTCATTGCTTTACATTATTGCAAAGTGAAGATCTTCCAAGATAAAGTTTCTATTCAAAACTGTATGAACTGTACGAGGATAATTTTTAACTGTGATGGTGAAGATGCTACCAAGTTGAAGAAAATGATGTGGGATAGTACTGAATCTCCTTCTCAACCTCTTACCCAACTTGGTCAGTCTTCAAAAGTTAGCTTAGAAGAAGATTTCATTAAGCTGCATCCTAGATGCTCAATTGAAGGTCTTAAAGATTTTGAACAGGAAAGTACTTTTGTAGTGAAGGCTACTATCAAACATGTTCTAGATCATGATGATTGGTGGTACACAGCATGTATCTGCAACAAAGCTGTTTATCCTGACTCCAAAATGTTTTTTTGTGAGAAATGTAACAAACATGTCATTAAGGTTACACCTAGGTTTAAACTTAGACTTCGTGTAATTGATGCTACTGATTCTACAACTTTTGTTGTATTTGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTCTGATATTCTTGACTTACAAGACAAGAACACTGCTGCTGGTAACTTGCCTAAAGAGTTTGAAGTCCTCATTGATAAGACCTATCTGTTCAAAGTTGAGTGCAAGAATGATTATAATAGCAAATTTGAGCAATCATTTAGAGTTAAAAAAGTCTGCATGGATGAAAAAATCATTGAAAGCTTTACTGATGTTGAACTTAAGTCTTTGGATGTATACTCTGCAAATGAAGAAGAAAGTAAACTTAAGCAGATTACAAATGAGATTGCACCTGATACCATTGCAGAGGATTTGCTGCTCAAATTCACTGAAGAATCAAATGATGTTGAGCCTGTAAGTGATCATTTGAACACTATAGAATCAAGCCCTGTTTCTACAGTGGAAGCTTTTGTCAATCAACCTTTAATTGATGTTGAAAATGATGACTTAACCCATAAAGAATCATCTCATTTGGATAATCTTAGCTTTGATTTGGCTACCAAAGCACGTGTCCCGGCAATTAAAAGGCAGAATCGATCTGCGGCTCAAGAAAACAAGAAGATCCCAGTGAAGATGTTGAAGAAGAACATCAAGATTGAAAAGTGA 1695 0.3611 MSALQKQTQSLQELNPEKESWNIVARVVRLWFVEDYTKGKSPFSMEIVLQDKEGVLIHASVRRTLIYKFQSKIKEDKVYYIQSFSVSCNGGSYRTTNHAYKINFQFGTKVNLVESTLVPNISTAYTPFSTIQAPGFDTDYLVNVIGMLTGVGTQRELEKGGKKTKMNVILIQSDGYRLECTLFGQYVDMLNAFLASEEDQYVVIALHYCKVKIFQDKVSIQNCMNCTRIIFNCDGEDATKLKKMMWDSTESPSQPLTQLGQSSKVSLEEDFIKLHPRCSIEGLKDFEQESTFVVKATIKHVLDHDDWWYTACICNKAVYPDSKMFFCEKCNKHVIKVTPRFKLRLRVIDATDSTTFVVFDRDASAMLKKSCSDILDLQDKNTAAGNLPKEFEVLIDKTYLFKVECKNDYNSKFEQSFRVKKVCMDEKIIESFTDVELKSLDVYSANEEESKLKQITNEIAPDTIAEDLLLKFTEESNDVEPVSDHLNTIESSPVSTVEAFVNQPLIDVENDDLTHKESSHLDNLSFDLATKARVPAIKRQNRSAAQENKKIPVKMLKKNIKIEK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01325 564 CDD RPA1_DBD_A_like 23 110 - -
Viun4g01325 564 Gene3D - 261 431 IPR012340 -
Viun4g01325 564 PANTHER OS03G0429900 PROTEIN 10 423 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun4g01325 564 SUPERFAMILY Nucleic acid-binding proteins 278 422 IPR012340 -
Viun4g01325 564 Gene3D - 118 252 IPR012340 -
Viun4g01325 564 Pfam Domain of unknown function DUF223 46 140 IPR003871 -
Viun4g01325 564 SUPERFAMILY Nucleic acid-binding proteins 10 114 IPR012340 -
Viun4g01325 564 CDD RPA1_DBD_C 292 422 IPR047192 -
Viun4g01325 564 Pfam Replication factor-A C terminal domain 292 421 IPR013955 -
Viun4g01325 564 SUPERFAMILY Nucleic acid-binding proteins 125 246 IPR012340 -
Viun4g01325 564 Gene3D - 6 112 IPR012340 -
Viun4g01325 564 CDD RPA1_DBD_B_like 143 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01325 Viun-Chr4 20411080 20413609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01325 3 422 Core DNA Replication Machinery Family AT5G08020 23.462 8.16e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01325 - - vun:114180582 1128.62