Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01309 ATGAAGCACCGTGTAATAATGCAAATGGCATCTTCTTCAGACACTTGGATGAAAGAATATAATGAAGCTGTAAAACTTGCTGATGATATCACTGGCATGATTGCTGAACGTAGTTCATTTCCTGCATCTGGACCCGAAACCCAGCGGCATGCATCTGCTACAAGAAGGAAGATCACGATATTAGGGACCAGGCTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCGAAAACTGAGAAGGAGATGAATCGTCGCAAGGATATGCTTGGAAACTTGAGGACTAAAGTTAACCAAATGGCTTCAACATTAAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGGCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAACAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCAGTGAATGAAGAGCTGGATCTACACACTAGACTCATTGATGACTTAGACGAACATGTAGATGTTACAGATTCTCGGCTGAGGCGAGTTCAAAAGAACTTGGCAGTTTTGAACAAACGTACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTCTATCAGTGATCGGTATAGTGGTTTTGGTTGTCGTCATATGGCTGTTGATCAAATATTTGTAA 714 0.4202 MKHRVIMQMASSSDTWMKEYNEAVKLADDITGMIAERSSFPASGPETQRHASATRRKITILGTRLDSLQSLLSKVPAKTEKEMNRRKDMLGNLRTKVNQMASTLNMSNFANRDSLLGPEIKSDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELDLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVVLVVVIWLLIKYL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01309 237 PANTHER SYNTAXIN 43 224 IPR045242 -
Viun4g01309 237 Pfam SNARE domain 178 229 IPR000727 -
Viun4g01309 237 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 141 203 IPR000727 -
Viun4g01309 237 SUPERFAMILY SNARE fusion complex 132 202 - -
Viun4g01309 237 SMART tSNARE_6 136 203 IPR000727 -
Viun4g01309 237 CDD SNARE_Qc 144 201 - -
Viun4g01309 237 Gene3D - 143 205 - -
Viun4g01309 237 FunFam syntaxin-51 isoform X2 143 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01309 Viun-Chr4 20067598 20071984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01309 9 237 SNARE and Associated Proteins AT1G16240 71.552 4.93e-123 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01309 K08503 - gmx:100794038 394.045