Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01300 ATGAAACATTCCCAATTACATGCTGTTTTGCTTTTGTCCATCTTTGTGGGAATTGGCTTAGCTTATCCCACAAAGGAGCAGTTAAGGGATAGGATTACGAAGCTGCCAGGACAGCCAGAGAACGTGGTTCTTTCTCAGTACTCGGGATATGTGACTGTGAATGAGGAAGCTGGGAGAGCATTGTTTTATTGGCTGGTAGAGACACAACCCAGTACTTCAAAGCCACTTGTTTTGTGGCTTAATGGTGGCCCTGGATGCTCCTCTATTGCTTATGGAGCAGCTGAAGAAATTGGTCCTTTTCGAATCAATCCTGATGGCAAATCACTTTACTCCAATCCTTATGCTTGGAACAAATTGGCAAATATACTCTTCCTCGATTCTCCTGCTGGTGTTGGATTTTCATATTCCAACACGACATCAGATCTGTATACCGCAGGTGACCAAAAAACAGCTGAAGATGCATATATATTCCTTGTTAATTGGCTTGAAAGGTTTCCTCAGTACAAGCATAGAGATTTCTACATTGCCGGAGAAAGTTATGCAGGCCACTATGTTCCTCAGTTGTCTCAAGTCATTTATCGCAAAAATAAAGGAATCGAGAACCCGGATATAAATTTCAAGGGGTTTATGGTTGGAAATGCTGTGATAGATGATTACCATGACTACATTGGAACATTTGAGTACTGGTGGGTGAATGGTTTGATTTCAGATGACACATATAAACTGCTGAGAATTGCGTGTGAGTTTGATTCTGCTCAGCATCCACCACAGAAATGTGTGGAAGCTTTTGAACTTGCAAGTGTTGAGCAGGGGAACATTGATCCATATAGCATTTATACCCCCGTCTGCAATGCTACAGCTGCAACACTCAAACGCCGTTTAAGGAATCGCTTAGGAAGGCTGTATGGAGCATACGATCCTTGTACTGAGAGGTACTCTGAGGTGTATTTCAATCGTCCAGAAGTTCAGAAGGCTCTTCATGCCAACGTAACTGCGATTCCTTATTCATGGATCGGATGCAATGATATCATCGTGGAGAATTGGGGTGATTCTCCACTTTCTATGCTTCCAATATATCAAGAAATTCTTGATGGTGGCCTCAGGATATGGGTCTACAGTGGAGACACTGATTCAGTGGTGCCTGTAACCGCGAGTCGGTATTCAATTGCTTCATTGAACCTACCTACCATCATCAACTGGTACCCTTGGAATGATAACGGCGAGGTTGGTGGGTGGAGTCAAGTTTACAAGGGACTTACATTGGTTGCAGTAAGAGGGGCAGGACATGAGGTTCCACTTCATAGACCTCGTCAAGCTTTTACCCTTTTCAAATCATTCCTCCAGAACAAGAACCTGCCATTTTCAACTCAATCGCTCAACCCTCATAAACTTAGATCAATTAGGCCCAAAACAAAGATCACTATGCCATCTTCCATGCAGGACCCTCCTATTTAG 1455 0.4323 MKHSQLHAVLLLSIFVGIGLAYPTKEQLRDRITKLPGQPENVVLSQYSGYVTVNEEAGRALFYWLVETQPSTSKPLVLWLNGGPGCSSIAYGAAEEIGPFRINPDGKSLYSNPYAWNKLANILFLDSPAGVGFSYSNTTSDLYTAGDQKTAEDAYIFLVNWLERFPQYKHRDFYIAGESYAGHYVPQLSQVIYRKNKGIENPDINFKGFMVGNAVIDDYHDYIGTFEYWWVNGLISDDTYKLLRIACEFDSAQHPPQKCVEAFELASVEQGNIDPYSIYTPVCNATAATLKRRLRNRLGRLYGAYDPCTERYSEVYFNRPEVQKALHANVTAIPYSWIGCNDIIVENWGDSPLSMLPIYQEILDGGLRIWVYSGDTDSVVPVTASRYSIASLNLPTIINWYPWNDNGEVGGWSQVYKGLTLVAVRGAGHEVPLHRPRQAFTLFKSFLQNKNLPFSTQSLNPHKLRSIRPKTKITMPSSMQDPPI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01300 484 FunFam Carboxypeptidase 305 452 - -
Viun4g01300 484 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Viun4g01300 484 ProSitePatterns Serine carboxypeptidases, histidine active site. 419 436 IPR033124 GO:0004185
Viun4g01300 484 SUPERFAMILY alpha/beta-Hydrolases 29 452 IPR029058 -
Viun4g01300 484 Gene3D alpha/beta hydrolase 27 285 IPR029058 -
Viun4g01300 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 419 432 IPR001563 GO:0004185|GO:0006508
Viun4g01300 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Viun4g01300 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Viun4g01300 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Viun4g01300 484 FunFam Carboxypeptidase 355 449 - -
Viun4g01300 484 Gene3D - 308 344 - -
Viun4g01300 484 Pfam Serine carboxypeptidase 36 449 IPR001563 GO:0004185|GO:0006508
Viun4g01300 484 Gene3D - 355 449 - -
Viun4g01300 484 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 436 IPR001563 GO:0004185|GO:0006508
Viun4g01300 484 FunFam Carboxypeptidase 26 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01300 Viun-Chr4 19781129 19785055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01300 313 452 Calmodulin-binding Proteins AT2G22960 30.496 6.57e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01300 K16297 - gmx:100796815 781.941