Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01282 ATGGCTGAGGCAAAGGCTCGAAATAGTAATGGTGGATCAGGAAACAGACGTAAAGGACCTGTTTTGAGGCGTGCCATGGCAACACAAACGCAAGATGAAGCAATGAAGGGGTCTTCACCTGCAACACCATGTGGGGCTTGCAAATTCTTGAGGAGGAAGTGCATTGGAGGGTGCATCTTTGCACCCCACTTTGGCACAGACCAAGGGGCAGCCAAATTTGCAGCTGTGCACAAGGTTTTTGGCGCTAGCAATGTGTCAAAGCTCTTGTCTAACATTCCATCCAACCGCCGCCATGAAGCAGCAACAACCATATCCTATGAGGCTCAAGCCAGGCTCTCCGATCCGGTTTATGGTTGTGTCTCCACCATCCTTGCTATGCAACAACAGGTAGCATCTCTGCAAGCAGAGCTAGCTATGTTGCAAACTCAAGTGATGAATAGTAAGTTTGCCTATGCAAGTGCTCTTCAGACCACACAACTACAGCAACCAAATAACATGAATGCAACAACACTACAACCAGCATATTCCAACAACTCATGTGCTTCCACTAACCTTATGAACTTGAGCAGCTTCAACAATAACCCTGCTGCTTTTGACCTTGCAATGGACACAACACCCTCATCAAACACTTTAGAGCCTCTTCAACACACAAGGTTGTCCAAATGTGAAGAAAAAGATGAACAACAAAGTAGGACTCAACAAGCCTTCAACCACCATTAA 720 0.4625 MAEAKARNSNGGSGNRRKGPVLRRAMATQTQDEAMKGSSPATPCGACKFLRRKCIGGCIFAPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIPSNRRHEAATTISYEAQARLSDPVYGCVSTILAMQQQVASLQAELAMLQTQVMNSKFAYASALQTTQLQQPNNMNATTLQPAYSNNSCASTNLMNLSSFNNNPAAFDLAMDTTPSSNTLEPLQHTRLSKCEEKDEQQSRTQQAFNHH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01282 239 Coils Coil 123 143 - -
Viun4g01282 239 ProSiteProfiles LOB domain profile. 42 144 IPR004883 -
Viun4g01282 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 41 229 - -
Viun4g01282 239 MobiDBLite consensus disorder prediction 220 239 - -
Viun4g01282 239 MobiDBLite consensus disorder prediction 1 22 - -
Viun4g01282 239 Pfam Lateral organ boundaries (LOB) domain 43 141 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01282 Viun-Chr4 19207768 19210879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01282 42 230 AS2 family AT3G03760 58.883 6.50e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun4g01282 LOB 2.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01282 - - gmx:100813769 370.548