Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01251 ATGTTCCCTTACAGTTCCACCCCCTACCCTTCCTTCCCTTCATCATCTTCTTCATTCCATCCTTTTCCTTTCCTCAACCTTGAGAATGCTTCTGCAAGCAACACCCTTCTTCACGATCCACTTTCTGTGCCTTACTTACCAACTCATCACAACCCTCCAAACCTCCAAGAAGCACTGAGCAATTTGCCAGTCACAGATCATAACTGTGGTGGTGGAGGTTCTGCAATGACCAAACCTGACCCAAGTGGTGGTGGTGCTCCTCACTATGGCCTTTCTTGTTTCCTCACAAAGAAGCCAGCTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGGTTGAGGGACCGGAGGGTGAGGTTGTCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGAGCTGGCAAGGAGCAAGAACAGCAACAACAGTGAAGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGAGTGTGATGATGACTGTGAAGTGGTTTCTGAGATCAAGCAGAAGCACCAACTCATCACTGCTGACGCTGCTGCTCCAAACAACCTTCAACAAGGGTTAGATTCAAGCGATAACAAGTCACCGACATTGCTGGCTGCAAGGGAGAGGATGAAGTTGAAAAGGGCACAGAAGGAACCTGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTTGTAACAAGATTATGTGCAATGTTAATTCCAACACAGGGAGGGTGCAACAAGACCTGAAGAAAAAGTGCCCTGCAATTGAAAACAACCACTCTCACCACCTTGTGGGAGGTGAAGGACCTAGAGATGACTTCAACGTTATCGAGGAATCAATTGTGATCAAGAGAAAGTTGAAGCCATCATTGATGTCCTCTTCTCATCACCATCACCAAAACCTTATGATCCCTAAGGAACCACCATGTTTCAGCAACAACAACAGTGAGTACCACCCTTTCTCCAATTTATCTCCAAATTGGGATGCTAATGGATCCACTGGGCGCTCCAACTTCTGTGCCATAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTCGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTTACACTAG 1182 0.4679 MFPYSSTPYPSFPSSSSSFHPFPFLNLENASASNTLLHDPLSVPYLPTHHNPPNLQEALSNLPVTDHNCGGGGSAMTKPDPSGGGAPHYGLSCFLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKNSNNSEEGAKSFSSSSECDDDCEVVSEIKQKHQLITADAAAPNNLQQGLDSSDNKSPTLLAARERMKLKRAQKEPAKMKESREKARARARERTCNKIMCNVNSNTGRVQQDLKKKCPAIENNHSHHLVGGEGPRDDFNVIEESIVIKRKLKPSLMSSSHHHHQNLMIPKEPPCFSNNNSEYHPFSNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01251 393 ProSiteProfiles R domain profile. 242 259 IPR017888 -
Viun4g01251 393 Pfam TCP family transcription factor 100 260 IPR017887 -
Viun4g01251 393 ProSiteProfiles TCP domain profile. 101 159 IPR017887 -
Viun4g01251 393 MobiDBLite consensus disorder prediction 231 252 - -
Viun4g01251 393 MobiDBLite consensus disorder prediction 160 181 - -
Viun4g01251 393 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 80 327 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01251 Viun-Chr4 17859510 17861592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01251 96 357 TCP Transcription Factor Family AT1G67260 34.799 4.07e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun4g01251 TCP 1.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01251 - - gmx:100801549 621.698