Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01228 ATGTACACTTCTAGGAAGAAAATTCACAAGGATAAGGATGCAGAGCCCACTGAACTTGAGGAGACAGTTGCACAGTATTTATTTGACTTGGAGAATACCAACCAGGATCTGAAAAGTGACTTGAAGGATCTCTATATAAATCAAGCAATTCAAATGGATGTGGCCAATAATCGCAAGGCTGTAGTCATCTATGTGCCTTTCAGATTGAGAAAAGCATTCCACAAGATTCATCTCCGACTTGTTAGGGAGTTGGAGAAGAAATTTAGCGGGAAGGATGTTATTATGATTGCCACAAGGAGGATCTTGCGGCCACCAAAGAAGGGCTCTGCCGTTCAGCGTCCCAGGACCCGGACATTGACTGCAGTTCATGATGCCATGCTAGAGGATGTTGTATATCCTGCGGAGATTGTTGGAAAAAGGGTCAGATATAGAATTGATGGTTCAAAAATAATGAAGGTTTTCTTGGACCCCAAGGAGCGCAATAACACTGAGTACAAGCTGGATACTTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGATTATCCAGTCACAGAAGCCTGA 576 0.4236 MYTSRKKIHKDKDAEPTELEETVAQYLFDLENTNQDLKSDLKDLYINQAIQMDVANNRKAVVIYVPFRLRKAFHKIHLRLVRELEKKFSGKDVIMIATRRILRPPKKGSAVQRPRTRTLTAVHDAMLEDVVYPAEIVGKRVRYRIDGSKIMKVFLDPKERNNTEYKLDTFSGVYRKLTGKDVVFDYPVTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01228 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Viun4g01228 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Viun4g01228 191 Coils Coil 27 47 - -
Viun4g01228 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01228 Viun-Chr4 16619584 16621965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01228 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 80.628 2.96e-115 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01228 K02993 - gmx:100500684 363.999