Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01216 ATGATAAACACCCAACTTCGTGATCAACGTGTTGTCCTCATTAGCCAAGATTCGTTTTATTACCCACTGAGTGATCAGACACTGCAAAAGGTTAATGAGTATAATTTTGATCATCCTGATGCCTTTGATATGAAGCTTTTGCTCTCGACAATGGAGAAATTAAAATGTGGACAACATGTTGATATACCAAATTATGATTTCAAACACCATAAGAGAATTGAAGCTGAACGTCAGGTTCATCCCGGAGATATCATAATCTTAGAAGGAATATTAGTTCTTCATGACTCAGGTGTTCGTAATCTTTTGAACATGAAGATCTTTGTTGATGAAGATTCTGATGTTCGTCTTTCACGAAGAATGAAACGTCTTGCTATTGATCATGGAAGGAATGTAGAGAATGTGCTAGATCAATATTCGAAATTTGTAAAGCCTAGCTTTGAAGATTTTGTGCTGCCAACGAAAAAATATGCTGATATTATTATTCCAAGTGGAGGGGATAACGATGTGGCCATTGACTTAATAGTACAGCACATACGTATGAAGCTTGGCCAAAATGATTTATGCAAAATACATCCCAATATTTTTGTTATATTTTCAACATTTCAGATAAAGGGAATGCATACTCTCATTCGTGATGCTAAGGCAACAAAGCATGACTTTGCCTTCTACTCAGATCGTCTAATTAGATTGGTTGTCGAACATGGATTGGGTCACCTTCCTTTTTCGGAGAAGCAGGTGATAACACCAACAGGATCTGTATATTCTGGTGTTGTTTTCTGTAGTAGGTTGTGTGGAGTTTCAGTAATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGTTGTAAAGGAATCAAGATCGGTAAAATCCTTATTCATGGACATGGCACAAATGGTCGACAGTTAATATATGAGAAGCTGCCGAAAGACATTGCAAGTCGTCATGTTTTGTTACTCGATCCGGTTCTCGCTACAGGAAACTCTGCAGTGAAAGCTATCTCTCTACTTCTGAAGAAAGGTGTAGCAGAATCTAATATCATATTTCTAAACTTAGTTGCAGCACCACAAGGAATAAATGCAGTGTGTGAGAGATTTCCACTGATAAAACTTGTAACATCAGAGATTGATGTATCACTCAATGAGAATTCTCATGTCATCCCTGGCTTAGGAGAGTTTGCTGATCGTTACTTCGCTACTGATGATTAG 1209 0.3755 MINTQLRDQRVVLISQDSFYYPLSDQTLQKVNEYNFDHPDAFDMKLLLSTMEKLKCGQHVDIPNYDFKHHKRIEAERQVHPGDIIILEGILVLHDSGVRNLLNMKIFVDEDSDVRLSRRMKRLAIDHGRNVENVLDQYSKFVKPSFEDFVLPTKKYADIIIPSGGDNDVAIDLIVQHIRMKLGQNDLCKIHPNIFVIFSTFQIKGMHTLIRDAKATKHDFAFYSDRLIRLVVEHGLGHLPFSEKQVITPTGSVYSGVVFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTNGRQLIYEKLPKDIASRHVLLLDPVLATGNSAVKAISLLLKKGVAESNIIFLNLVAAPQGINAVCERFPLIKLVTSEIDVSLNENSHVIPGLGEFADRYFATDD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01216 402 CDD UMPK 1 179 IPR000764 -
Viun4g01216 402 PRINTS Uridine kinase signature 113 123 - -
Viun4g01216 402 PRINTS Uridine kinase signature 127 138 - -
Viun4g01216 402 PRINTS Uridine kinase signature 12 23 - -
Viun4g01216 402 PRINTS Uridine kinase signature 57 72 - -
Viun4g01216 402 PRINTS Uridine kinase signature 149 162 - -
Viun4g01216 402 Gene3D - 1 190 IPR027417 -
Viun4g01216 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 174 IPR027417 -
Viun4g01216 402 FunFam Uridine kinase 1 184 - -
Viun4g01216 402 Pfam Phosphoribulokinase / Uridine kinase family 14 170 IPR006083 GO:0005524|GO:0016301
Viun4g01216 402 CDD PRTases_typeI 263 373 IPR000836 -
Viun4g01216 402 FunFam Uridine kinase 185 400 - -
Viun4g01216 402 Gene3D - 191 401 IPR029057 -
Viun4g01216 402 SUPERFAMILY PRTase-like 184 400 IPR029057 -
Viun4g01216 402 Pfam Uracil phosphoribosyltransferase 199 400 - -
Viun4g01216 402 PANTHER URIDINE KINASE 5 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01216 Viun-Chr4 16369950 16413048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01216 1 402 PRT Gene Family AT3G27440 73.881 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01216 K00876 - gmx:100803453 712.22