Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01202 ATGGCGCATCAAGGGGAACCGACGAAGCTGCGGTGGGGCGAGCTGGAGGAGGACGATGGCGAGGATCTGGACTTCCTCCTCCCGCCGCGACAGGTCATAGGGCCCGACGACAACGGCATAAAGAAGGTCATCGAATACAAGTTCGACGAGGACGGCAACAAGGTGAAGATCACAACCACCACGCGCACCCGTAAACTCGCCAACGCGCGTCTCAGCAAACGCGCTGTCGAGCGCCGCTCCTGGCCCAAGTTCGGTGACGCCGTCCACGAAGACGTCGGCAGCCGCCTCACCATGGTATCCACCGAAGAGATCCTCCTCGAACGCCCCAAGCCTCTTGGGTCCAAAACGGAGGAGCCGAAGAGTGGTGGAGACCCCTTGGCTCAATTCCAGAAAGGTGCTGTTCTGATGGTGTGTAGGACTTGTGGGAAGAAGGGTGATCACTGGACCTCAAGGTGTCCATACAAGGATCTGGCCCCGCCATCTGAGGGATTCGTGGATAAGCCTGCAACATTAGATGCTGCAGCGGCAACAGGTGGCGCAACCAAGGGAGCCTACGTGCCTCCTGGTATGAGGGCTGGGGCTGAGAGGAGTAGTGGATCTGATATGCGGCGAAGGAATGATGAGAACTCTGTGAGGGTAACCAATCTCTCTGAAGACACAAGAGAACCAGATTTGCTGGAGCTGTTCCGTCCTTTTGGTCCTGTAAGCAGAGTTTATGTTGCCATTGATCAGAAGACTAGCATGAGCAGGGGTTTTGGCTTTGTTAACTTTGTGAACAGGGAAGATGCACAGAGAGCTATCAACAAACTTAATGGGTATGGTTACGATAATCTCATACTTAGAGTTGAATGGGCAACCCCTAGGGCAAACTAG 873 0.5475 MAHQGEPTKLRWGELEEDDGEDLDFLLPPRQVIGPDDNGIKKVIEYKFDEDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGSKTEEPKSGGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPATLDAAAATGGATKGAYVPPGMRAGAERSSGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTSMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01202 290 CDD RRM_eIF3G_like 210 285 IPR034240 -
Viun4g01202 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 22 286 - -
Viun4g01202 290 PIRSF Transl_init_eIF-3_RNA-bind 1 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Viun4g01202 290 SUPERFAMILY RNA-binding domain, RBD 194 289 IPR035979 GO:0003676
Viun4g01202 290 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Viun4g01202 290 SMART rrm1_1 210 283 IPR000504 GO:0003723
Viun4g01202 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 277 IPR000504 GO:0003723
Viun4g01202 290 CDD eIF3G 38 156 IPR024675 -
Viun4g01202 290 FunFam Eukaryotic translation initiation factor 3 subunit G 173 290 - -
Viun4g01202 290 Gene3D - 182 290 IPR012677 -
Viun4g01202 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Viun4g01202 290 MobiDBLite consensus disorder prediction 179 210 - -
Viun4g01202 290 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01202 Viun-Chr4 15925287 15927616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01202 4 288 Eukaryotic Initiation Factors Gene Family AT3G11400 67.722 3.60e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01202 K03248 - gmx:100818725 552.747