Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01198 ATGGGTCGTGCAAGAGTAACCTTAAAACAGATCTCGAGTGAAAGATGTCGCAAGACAACTTTGGCGCGAAGAAAGAGAGGACTGATGAAGAAAATGTGGGAATTTTCGAAGAGGTGCGGTGGTGAGCAGTGTTTGATTGTGTATGATGATGATGGTGATGTTGAAGCAGTGACTTCGCCCCAAAACCCTATAGAAATACATTCGATGATTCAAAAGTACTATGAAACTCAATTAAAGAATGGGAGACCTCACAAGACTTACGGTATTCAAGAGTTTTTTGAGAACAGAAAGAACATGATTGAAGCTGAGATTTCCAAAGTTCATAAAGAAATCAGCAGCATCAAGTACCCAACTTGGGATCCAAGTTTCGTGAACATGGAAGAGGATGAATTGAGGGCCTTCTGTGCTCATGTGGATGCCAAAATTCAAGCCTGTGATGAGGGAATTAAATTGTTGAAGAACAAGAATGTACCCAATCTGATGCAGAATTTCGATGAAAATAGTTATTTGTTGAGAAACATGGAAGAGGGTGGGTTTAGTTTTGTGCCAAACATGCCTCAGGAAAACATCTCTCAAAGCCAACCACTGCTTCAAGATTTTATGGAACTTTATGATAAGAATTATGAAGCAGTAGATGTGCCACTGAATTCAACCAATCAACTCAGTGAGTTGGAGTTTGAGGAATTGATTTGGGAACTTTCTAATTGTGATTCGTCTTATCAACCATGTGATCATCATGTGGGTTGTAGTATTCAACCTCATCAATCTGTCTTGCCAACCATTTCTGCTGAACATCAAAATCAGCACCAAGAAGGAGCATCTTTCCACGTCTTGCCTCAAACTAATTACTATAACATGCTCTTCTGA 867 0.3968 MGRARVTLKQISSERCRKTTLARRKRGLMKKMWEFSKRCGGEQCLIVYDDDGDVEAVTSPQNPIEIHSMIQKYYETQLKNGRPHKTYGIQEFFENRKNMIEAEISKVHKEISSIKYPTWDPSFVNMEEDELRAFCAHVDAKIQACDEGIKLLKNKNVPNLMQNFDENSYLLRNMEEGGFSFVPNMPQENISQSQPLLQDFMELYDKNYEAVDVPLNSTNQLSELEFEELIWELSNCDSSYQPCDHHVGCSIQPHQSVLPTISAEHQNQHQEGASFHVLPQTNYYNMLF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01198 288 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Viun4g01198 288 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun4g01198 288 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun4g01198 288 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun4g01198 288 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun4g01198 288 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun4g01198 288 Gene3D - 14 75 IPR036879 GO:0003677|GO:0046983
Viun4g01198 288 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01198 Viun-Chr4 15757477 15758721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01198 1 143 Type I MADS-box Gene Family AT5G55690 33.784 3.48e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun4g01198 SRF-TF 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01198 - - vun:114171877 350.903