Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01184 ATGGCTCCCCTTTCATGCTTCATTCTTCTTTTTGCTCTTTCTCTTCTCACACTCTCTTTTATTTCTTCCTCTGCAGTTCCAGATCCTGAATTGGTTGTTCAAGAGGTACAAAGAAGCATCAATGCCTCAAGGAGAAACTTGGGTTATTTATCATGCGGAACCGGGAACCCCATCGACGACTGCTGGCGGTGCAACCCTAACTGGCAGAACAACCGGCAGCGGCTAGCCGACTGCGCCATCGGGTTCGGCAAGGACGCGATCGGCGGAAAAAACGGCCGAATCTACGAGGTCACAGACTCCGGCGACGACGACGCCGTTAACCCAAAGCCGGGAACCCTCCGTTACGCCGCCATACAAGACGAACCCCTGTGGATAATCTTCAAGAGGGACATGGTAATCACGCTAAAGCAAGAGCTTCTGGTGAACTCTTTCAAGACAATCGACGGCAGAGGCGCGAGCGTGCACATCGCCGGTGGGGGCTGCCTCACCATACACTACGTGAGCAACGTGATCGTTCATGGGATTCACATCCACGATTGCAAGCCCACCGGGAACACCAACATCAGAGACTCGCCGGAGCACTCGGGGTTTTGGACGAAATCGGACGGCGACGGAATCTCCATCTTTAACTCGAAGCATATCTGGGTGGATCATTGCTCGTTGTCGAATTGTCAGGATGGACTGATCGACGCCATTCATGGATCCACCGCCATCACCATCTCCAACAATTACATGACCCACCATGACAAGGTTATGCTTTTGGGACACAGTGATTCCTACACGCAGGACAAGGACATGCAGGTCACCATAGCCTTCAATCATTTTGGAGAAGGTCTTGTCCAGAGAATGCCAAGATGCAGACACGGGTATTTTCATGTGGTGAACAACGACTACACACACTGGGAAATGTATGCCATTGGAGGGAGTGCGAACCCCACCATAAACAGCCAGGGAAACAGGTTTCTTGCCCCAGACATTAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCCCCACAGAGTGAGTGGATGAGTTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCCGGTGCTTCTTCCATCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGATCCATGACCGTCACTGCTGGTGCACTTACCTGTAGAAAGGGAAACCGTTGCTGA 1215 0.5136 MAPLSCFILLFALSLLTLSFISSSAVPDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCNPNWQNNRQRLADCAIGFGKDAIGGKNGRIYEVTDSGDDDAVNPKPGTLRYAAIQDEPLWIIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCLTIHYVSNVIVHGIHIHDCKPTGNTNIRDSPEHSGFWTKSDGDGISIFNSKHIWVDHCSLSNCQDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTVTAGALTCRKGNRC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01184 404 Gene3D - 55 397 IPR012334 -
Viun4g01184 404 PANTHER PECTATE LYASE 18-RELATED 22 402 IPR045032 GO:0030570
Viun4g01184 404 Pfam Pectate lyase 137 321 IPR002022 -
Viun4g01184 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Viun4g01184 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Viun4g01184 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Viun4g01184 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Viun4g01184 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Viun4g01184 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Viun4g01184 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Viun4g01184 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Viun4g01184 404 FunFam Pectate lyase 55 397 - -
Viun4g01184 404 SUPERFAMILY Pectin lyase-like 39 398 IPR011050 -
Viun4g01184 404 SMART amb_all 130 327 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01184 Viun-Chr4 15207007 15209985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01184 7 404 Polysaccharide Lyase AT5G63180 73.881 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01184 K01728 - gmx:100794814 778.474