LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g01174	ATGCAACCATCTCTTTCTTCCTTCTGTTACAAATTCAGATATGATGTGTTCCTTAGTTTTCGAGGGAAAGATACTCGCCATGGTTTTACAGGAAATCTCTACAAATCTCTTTGTCATAGAGGAATTCACAGCTTCTTTGATGACCACCATCTTCCTAAAGGGGACCATATTTCCTCTGAACTTGAGAACACAATCCAAGACTCCAGAATTTTCATCATTATCCTCTCTGAGAACTATGCATCTTCCTCTTTCTGCTTAAATGAACTTGATTACATCCTTAGGTTTATCAAGCATAAGGGTCGGTTGGTTTTCCCAGTTTTTTATGGAGTTGACCCTTCTGATGTGAGACACCACATGGGTACTTTTGGAGAGGCATTGGCTCATCATGAAAAGAAATTAAATTCTTATTACAACATGGAAAAGCTTGAGAGATGGAAGATGGCTCTGCATCAAGTGGCTAACTTGTCTGGCTACCATTTCAAACATGGGGAAGGATATGAATATGAGTTTATTGAGAGGATTGTTGAGTTGGTTTGCAGCAAGATTAACCGTGTTGCTTTACATGTTTCGGATTACCCAGTTGGACTAGAGTCACAGGTGCTACAAGTAAAGATGCTTTTAGATGTTGGATCTGATGATGTTGTCCACATGGTAGGATTCCATGGACTTGGTGGAGTAGGGAAAACGACACTTGTTGTTGCAGTTTATAATTCCATTGCTGACCATTTTGAAGCTTTATGTTTTCTTGAAAACGTGAGAGAAGCTTCAAGTAAACATGGGTTACTACATCTCCAAAGCACCCTTCTTTCTGAAACAGTTGGAGAGATTAAGTTAACAAGTGTTAAAAAAGGAATTTCTATAATACAGCACAGGCTGCAGCAAAAGAAGGTTCTTTTGATTCTAGATGATGTTGACAAAGAGGAACAACTACAGGCACTTGCTGGAAGACCTCATTGGTTTGGTCTAGGCAGTAGAGTCATTATTACAACTCGAGACAAACAATTGTTAAAATCTCATGGGGTTGAAAGAACATATGAGGTTAAAGAATTGAATGAAGAAAATGCTCTTGAATTACTTACTTGGAAAGCTTTCAAGTTTGAAAATTTTGATCCAAGTTACAAGGATGTTTTGAATCTAGCAGTGACTTATGCCTCAGGCCTTCCACTGGCTTTGGAAGTGATAGGTTCCAACTTATTTGGAAGAAACATAGAACAATGGAAAAGTGGTTTGGATCAGTACAAGAAAATTCCTAAAATGGATATCCAGGATACACTTAAAGTGAGTTATGATGCTTTGGAAGAAGATGAACAAAGTGTTTTTCTTGACATTGCTTGTTTCTTCAAAAACTATGACTTGGCAGAGGTTGAAGACATACTTCGTGCTCATCATGGTCATAACATTAAACATCATATTGATGTGTTGGTTGAAAAATCTCTCATAAAGATTAGTTTGGATGGTAAAGTGACACTACATGATTTGATAAAAGACATGGGTAGAGAAATTGTGCGTAGAGAATCACCCAAAGAGCCTGGGAAACGTAGCAGGTTATGGTTCCTTGAGGATATAGTTCAAGTTTTAGAAGACAATAAGGGAAGTGGTAAGATTGAAACCATATGCATGGATTTCCCTTCATTTGAAGAAGTGGAAATAGAATGGGATGGAGATGCCTTCAAGAAGATGAAAAATCTCAGAACACTTATTATCAGAAATGGTCATTTCTCCACAGGTCCAAAACATCTTCCTAATTCTTTGAGAGTGATGGAATGGTGGAGATATCCTTCACAGAATTTTCCACAGGATTTTCATCCAAAGAAACTTTCTATATTCAAGTTACCATACTGTGAGTTTACATCACTAGAGTTGAATGACTTAGTAAGACAGGCAAGTGTATTGACTTCATTTCCTGGTTATATTTATGTTCATAAATTCTCTTTTACTTTGTTGATTTTCTTCTTCTTTTTTTCTCTTTTGCAGAAGTTTGTGAATATGACAAGTTTAAATTTTGACGAATGTCGATATTTAAAACAAATACCTGATGTATCATGTCTAACACATTTGGAAAACTTGTCATTTCGTTGGTGTCCAAAGTTATCTTCACTTCACTACTCAGTTGGGTTCTTGGAAAAACTTAAAATCTTAGATGCAGAAGGTTGCTCCAAGCTCAAGAGTTTTCCTCCAATCAAGTTAACCTCTCTTGAGCAACTCAAACTTCGGTATTGTCATAGTCTTGAAAACTTTCCAGAAGTATTAGGAAACATGGAAAATGTAAGAGAACTTGACTTGAAAGATACTCCTATAAAAAAATTCCCACTTTCATTTCAAAATCTTACTCGACTGCAAAAGTTACATTTGTGTCTGAGTTGTGGAGTGATGGAAAATGGTTGTGATGGGGTTCCCCTTTCAAGCATTTGTATGATGCCAGAACTGGTTGATATTGTAGCAAATGAATGGAAAGGTGAGCTTTTCTGTAAAGCCAATGAAGGTGTAGAAAAAGTGAGCTCAATCTTCTATACAAATGTTCAATATCTTCAACTCAGATGTTGCAACTTAACAGATGATTTTTTTCTGACACTTCTCCCATGGTTTGCCAATATGAAGAACTTAGACCTATCAGGGAATAATTTCATTATCATTCCAGAATGCATCAAAGAATTCCACTTTTTAACTAGGCTTAATTTGAACTTTTGTGAGCAACTTCAAGAAATCAAAGGCATTCCTCCAAACCTGAAATATTTCTCTGCAATAGATTGCATATCCTTGACTTCCTCATGTAGAAGCATGTTACTAAATCAGGAACTGCATGAGGCTGGAAGCACCTTCTTTTATTTGCCAGGAGCCAAGATTGTAGAGTGGTTTGAGTTCCAAACGTTGGAAGTGCCAATTTGTTTTTGGTTTCATGGCAAACTCCCAGCCATGGTTATTTGTCTTGCAATGGAACGAATGTGTGAGTATTCCTCGTCAAAAGGTTGTAAATACAGACCCTTGGTGATCCATAGCACATTTAGACTCATGTCACCCATTGTGATCATCAATGGCAACGAACATTTGTTACAAACTTGGGAGATGATGGATGATTGTACTTGTGTTTTTGACCTGAGGGAAACAAAACTGAAAAATGATTTTGATGAACAACTTTTGGAAAATGAATGGAACCATGCTGAGGTTACATGTCGATATGTCAGTTTAGGCCAAACCTTAATAAAACATGGAATCCATGTATTGAAACAGGATAGTAGCGTGGAGGAGATTCGATTCACTGATCCTTGCAAAAAAAGAAATCTTGATATAATGAGCTCAATAGCCCAAAATCACAGCAGCAACAATTGTTGA	3330	0.3697	MQPSLSSFCYKFRYDVFLSFRGKDTRHGFTGNLYKSLCHRGIHSFFDDHHLPKGDHISSELENTIQDSRIFIIILSENYASSSFCLNELDYILRFIKHKGRLVFPVFYGVDPSDVRHHMGTFGEALAHHEKKLNSYYNMEKLERWKMALHQVANLSGYHFKHGEGYEYEFIERIVELVCSKINRVALHVSDYPVGLESQVLQVKMLLDVGSDDVVHMVGFHGLGGVGKTTLVVAVYNSIADHFEALCFLENVREASSKHGLLHLQSTLLSETVGEIKLTSVKKGISIIQHRLQQKKVLLILDDVDKEEQLQALAGRPHWFGLGSRVIITTRDKQLLKSHGVERTYEVKELNEENALELLTWKAFKFENFDPSYKDVLNLAVTYASGLPLALEVIGSNLFGRNIEQWKSGLDQYKKIPKMDIQDTLKVSYDALEEDEQSVFLDIACFFKNYDLAEVEDILRAHHGHNIKHHIDVLVEKSLIKISLDGKVTLHDLIKDMGREIVRRESPKEPGKRSRLWFLEDIVQVLEDNKGSGKIETICMDFPSFEEVEIEWDGDAFKKMKNLRTLIIRNGHFSTGPKHLPNSLRVMEWWRYPSQNFPQDFHPKKLSIFKLPYCEFTSLELNDLVRQASVLTSFPGYIYVHKFSFTLLIFFFFFSLLQKFVNMTSLNFDECRYLKQIPDVSCLTHLENLSFRWCPKLSSLHYSVGFLEKLKILDAEGCSKLKSFPPIKLTSLEQLKLRYCHSLENFPEVLGNMENVRELDLKDTPIKKFPLSFQNLTRLQKLHLCLSCGVMENGCDGVPLSSICMMPELVDIVANEWKGELFCKANEGVEKVSSIFYTNVQYLQLRCCNLTDDFFLTLLPWFANMKNLDLSGNNFIIIPECIKEFHFLTRLNLNFCEQLQEIKGIPPNLKYFSAIDCISLTSSCRSMLLNQELHEAGSTFFYLPGAKIVEWFEFQTLEVPICFWFHGKLPAMVICLAMERMCEYSSSKGCKYRPLVIHSTFRLMSPIVIINGNEHLLQTWEMMDDCTCVFDLRETKLKNDFDEQLLENEWNHAEVTCRYVSLGQTLIKHGIHVLKQDSSVEEIRFTDPCKKRNLDIMSSIAQNHSSNNC	1109

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g01174	1109	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	14	913	IPR044974	GO:0006952
	Viun4g01174	1109	SUPERFAMILY	"Winged helix" DNA-binding domain	420	527	IPR036390	-
	Viun4g01174	1109	Pfam	TIR domain	14	181	IPR000157	GO:0007165
	Viun4g01174	1109	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	443	IPR027417	-
	Viun4g01174	1109	FunFam	Disease resistance protein (TIR-NBS-LRR class)	10	184	-	-
	Viun4g01174	1109	Gene3D	-	184	343	IPR027417	-
	Viun4g01174	1109	SMART	till_3	13	155	IPR000157	GO:0007165
	Viun4g01174	1109	ProSiteProfiles	TIR domain profile.	12	182	IPR000157	GO:0007165
	Viun4g01174	1109	Gene3D	Ribonuclease Inhibitor	823	936	IPR032675	-
	Viun4g01174	1109	Pfam	NB-ARC domain	200	417	IPR002182	GO:0043531
	Viun4g01174	1109	Gene3D	Ribonuclease Inhibitor	526	818	IPR032675	-
	Viun4g01174	1109	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	158	IPR035897	-
	Viun4g01174	1109	Gene3D	-	11	183	IPR035897	-
	Viun4g01174	1109	PRINTS	Disease resistance protein signature	705	721	-	-
	Viun4g01174	1109	PRINTS	Disease resistance protein signature	217	232	-	-
	Viun4g01174	1109	PRINTS	Disease resistance protein signature	384	398	-	-
	Viun4g01174	1109	PRINTS	Disease resistance protein signature	291	305	-	-
	Viun4g01174	1109	SUPERFAMILY	L domain-like	551	926	-	-
	Viun4g01174	1109	Gene3D	-	349	433	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g01174	Viun-Chr4	14750182	14754518	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g01174	14	784	WRKY Transcription Factor Family	AT4G12020	29.849	4.82e-74	268

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g01174	-		-	gmx:100784366	1565.82