LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g01173	ATGCAACCATCTCTTTCTTCCTTCTGTTACAAATTCAGATATGATGTGTTCCTTAGTTTTCGAGGGAAAGATACTCGCCATGGTTTTACAGGAAATCTCTACAAATCTCTTTGTCATAGAGGAATTCACAGCTTCTTTGATGACCACCATCTTCCTAAAGGGGACCATATTTCCTCTGAACTTGAGAACACAATCCAAGACTCCAGAATTTTCATCATTATCCTCTCTGAGAACTATGCATCTTCCTCTTTCTGCTTAAATGAACTTGATTACATCCTTAGGTTTATCAAGCATAAGGGTCGGTTGGTTTTCCCAGTTTTTTATGGAGTTGACCCTTCTGATGTGAGACACCACATGGGTACTTTTGGAGAGGCATTGGCTCATCATGAAAAGAAATTAAATTCTTATTACAACATGGAAAAGCTTGAGAGATGGAAGATGGCTCTGCATCAAGTGGCTAACTTGTCTGGCTACCATTTCAAACATGGGGAAGGATATGAATATGAGTTTATTGAGAGGATTGTTGAGTTGGTTTGCAGCAAGATTAACCGTGTTGCTTTACATGTTTCGGATTACCCAGTTGGACTAGAGTCACAGGTGCTACAAGTAAAGATGCTTTTAGATGTTGGATCTGATGATGTTGTCCACATGGTAGGATTCCATGGACTTGGTGGAGTAGGGAAAACGACACTTGTTGTTGCAGTTTATAATTCCATTGCTGACCATTTTGAAGCTTTATGTTTTCTTGAAAACGTGAGAGAAGCTTCAAGTAAACATGGGTTACTACATCTCCAAAGCACCCTTCTTTCTGAAACAGTTGGAGAGATTAAGTTAACAAGTGTTAAAAAAGGAATTTCTATAATACAGCACAGGCTGCAGCAAAAGAAGGTTCTTTTGATTCTAGATGATGTTGACAAAGAGGAACAACTACAGGCACTTGCTGGAAGACCTCATTGGTTTGGTCTAGGCAGTAGAGTCATTATTACAACTCGAGACAAACAATTGTTAAAATCTCATGGGGTTGAAAGAACATATGAGGTTAAAGAATTGAATGAAGAAAATGCTCTTGAATTACTTACTTGGAAAGCTTTCAAGTTTGAAAATTTTGATCCAAGTTACAAGGATGTTTTGAATCTAGCAGTGACTTATGCCTCAGGCCTTCCACTGGCTTTGGAAGTGATAGGTTCCAACTTATTTGGAAGAAACATAGAACAATGGAAAAGTGGTTTGGATCAGTACAAGAAAATTCCTAAAATGGATATCCAGGATACACTTAAAGTGAGTTATGATGCTTTGGAAGAAGATGAACAAAGTGTTTTTCTTGACATTGCTTGTTTCTTCAAAAACTATGACTTGGCAGAGGTTGAAGACATACTTCGTGCTCATCATGGTCATAACATTAAACATCATATTGATGTGTTGGTTGAAAAATCTCTCATAAAGATTAGTTTGGATGGTAAAGTGACACTACATGATTTGATAAAAGACATGGGTAGAGAAATTGTGCGTAGAGAATCACCCAAAGAGCCTGGGAAACGTAGCAGGTTATGGTTCCTTGAGGATATAGTTCAAGTTTTAGAAGACAATAAGGGAAGTGGTAAGATTGAAACCATATGCATGGATTTCCCTTCATTTGAAGAAGTGGAAATAGAATGGGATGGAGATGCCTTCAAGAAGATGAAAAATCTCAGAACACTTATTATCAGAAATGGTCATTTCTCCACAGGTCCAAAACATCTTCCTAATTCTTTGAGAGTGATGGAATGGTGGAGATATCCTTCACAGAATTTTCCACAGGATTTTCATCCAAAGAAACTTTCTATATTCAAGTTACCATACTGTGAGTTTACATCACTAGAGTTGAATGACTTAGTAAGACAGAAGTTTGTGAATATGACAAGTTTAAATTTTGACGAATGTCGATATTTAAAACAAATACCTGATGTATCATGTCTAACACATTTGGAAAACTTGTCATTTCGTTGGTGTCCAAAGTTATCTTCACTTCACTACTCAGTTGGGTTCTTGGAAAAACTTAAAATCTTAGATGCAGAAGGTTGCTCCAAGCTCAAGAGTTTTCCTCCAATCAAGTTAACCTCTCTTGAGCAACTCAAACTTCGGTATTGTCATAGTCTTGAAAACTTTCCAGAAGTATTAGGAAACATGGAAAATGTAAGAGAACTTGACTTGAAAGATACTCCTATAAAAAAATTCCCACTTTCATTTCAAAATCTTACTCGACTGCAAAAGTTACATTTGTGTCTGAGTTGTGGAGTGATGGAAAATGGTTGTGATGGGGTTCCCCTTTCAAGCATTTGTATGATGCCAGAACTGGTTGATATTGTAGCAAATGAATGGAAAGGTGAGCTTTTCTGTAAAGCCAATGAAGGTGTAGAAAAAGTGAGCTCAATCTTCTATACAAATGTTCAATATCTTCAACTCAGATGTTGCAACTTAACAGATGATTTTTTTCTGACACTTCTCCCATGGTTTGCCAATATGAAGAACTTAGACCTATCAGGGAATAATTTCATTATCATTCCAGAATGCATCAAAGAATTCCACTTTTTAACTAGGCTTAATTTGAACTTTTGTGAGCAACTTCAAGAAATCAAAGGCATTCCTCCAAACCTGAAATATTTCTCTGCAATAGATTGCATATCCTTGACTTCCTCATGTAGAAGCATGTTACTAAATCAGGAACTGCATGAGGCTGGAAGCACCTTCTTTTATTTGCCAGGAGCCAAGATTGTAGAGTGGTTTGAGTTCCAAACGTTGGAAGTGCCAATTTGTTTTTGGTTTCATGGCAAACTCCCAGCCATGGTTATTTGTCTTGCAATGGAACGAATGTGTGAGTATTCCTCGTCAAAAGGTTGTAAATACAGACCCTTGGTGATCCATAGCACATTTAGACTCATGTCACCCATTGTGATCATCAATGGCAACGAACATTTGTTACAAACTTGGGAGATGATGGATGATTGTACTTGTGTTTTTGACCTGAGGGAAACAAAACTGAAAAATGATTTTGATGAACAACTTTTGGAAAATGAATGGAACCATGCTGAGGTTACATGTCGATATGTCAGTTTAGGCCAAACCTTAATAAAACATGGAATCCATGTATTGAAACAGGATAGTAGCGTGGAGGAGATTCGATTCACTGATCCTTGCAAAAAAAGAAATCTTGATATAATGAGCTCAATAGCCCAAAATCACAGCAGCAACAATTGTTGA	3237	0.3723	MQPSLSSFCYKFRYDVFLSFRGKDTRHGFTGNLYKSLCHRGIHSFFDDHHLPKGDHISSELENTIQDSRIFIIILSENYASSSFCLNELDYILRFIKHKGRLVFPVFYGVDPSDVRHHMGTFGEALAHHEKKLNSYYNMEKLERWKMALHQVANLSGYHFKHGEGYEYEFIERIVELVCSKINRVALHVSDYPVGLESQVLQVKMLLDVGSDDVVHMVGFHGLGGVGKTTLVVAVYNSIADHFEALCFLENVREASSKHGLLHLQSTLLSETVGEIKLTSVKKGISIIQHRLQQKKVLLILDDVDKEEQLQALAGRPHWFGLGSRVIITTRDKQLLKSHGVERTYEVKELNEENALELLTWKAFKFENFDPSYKDVLNLAVTYASGLPLALEVIGSNLFGRNIEQWKSGLDQYKKIPKMDIQDTLKVSYDALEEDEQSVFLDIACFFKNYDLAEVEDILRAHHGHNIKHHIDVLVEKSLIKISLDGKVTLHDLIKDMGREIVRRESPKEPGKRSRLWFLEDIVQVLEDNKGSGKIETICMDFPSFEEVEIEWDGDAFKKMKNLRTLIIRNGHFSTGPKHLPNSLRVMEWWRYPSQNFPQDFHPKKLSIFKLPYCEFTSLELNDLVRQKFVNMTSLNFDECRYLKQIPDVSCLTHLENLSFRWCPKLSSLHYSVGFLEKLKILDAEGCSKLKSFPPIKLTSLEQLKLRYCHSLENFPEVLGNMENVRELDLKDTPIKKFPLSFQNLTRLQKLHLCLSCGVMENGCDGVPLSSICMMPELVDIVANEWKGELFCKANEGVEKVSSIFYTNVQYLQLRCCNLTDDFFLTLLPWFANMKNLDLSGNNFIIIPECIKEFHFLTRLNLNFCEQLQEIKGIPPNLKYFSAIDCISLTSSCRSMLLNQELHEAGSTFFYLPGAKIVEWFEFQTLEVPICFWFHGKLPAMVICLAMERMCEYSSSKGCKYRPLVIHSTFRLMSPIVIINGNEHLLQTWEMMDDCTCVFDLRETKLKNDFDEQLLENEWNHAEVTCRYVSLGQTLIKHGIHVLKQDSSVEEIRFTDPCKKRNLDIMSSIAQNHSSNNC	1078

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g01173	1078	Gene3D	Ribonuclease Inhibitor	536	719	IPR032675	-
	Viun4g01173	1078	Pfam	NB-ARC domain	200	417	IPR002182	GO:0043531
	Viun4g01173	1078	Pfam	TIR domain	14	181	IPR000157	GO:0007165
	Viun4g01173	1078	SUPERFAMILY	L domain-like	551	895	-	-
	Viun4g01173	1078	FunFam	Disease resistance protein (TIR-NBS-LRR class)	10	184	-	-
	Viun4g01173	1078	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	14	882	IPR044974	GO:0006952
	Viun4g01173	1078	Gene3D	-	349	433	IPR042197	-
	Viun4g01173	1078	Gene3D	-	11	183	IPR035897	-
	Viun4g01173	1078	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	443	IPR027417	-
	Viun4g01173	1078	SMART	till_3	13	155	IPR000157	GO:0007165
	Viun4g01173	1078	ProSiteProfiles	TIR domain profile.	12	182	IPR000157	GO:0007165
	Viun4g01173	1078	Gene3D	Ribonuclease Inhibitor	720	904	IPR032675	-
	Viun4g01173	1078	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	158	IPR035897	-
	Viun4g01173	1078	PRINTS	Disease resistance protein signature	291	305	-	-
	Viun4g01173	1078	PRINTS	Disease resistance protein signature	384	398	-	-
	Viun4g01173	1078	PRINTS	Disease resistance protein signature	217	232	-	-
	Viun4g01173	1078	PRINTS	Disease resistance protein signature	674	690	-	-
	Viun4g01173	1078	SUPERFAMILY	"Winged helix" DNA-binding domain	420	527	IPR036390	-
	Viun4g01173	1078	Gene3D	-	184	343	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g01173	Viun-Chr4	14750182	14754518	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g01173	14	753	WRKY Transcription Factor Family	AT4G12020	30.339	4.15e-76	274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g01173	-		-	gmx:100784366	1582