Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01172 ATGGGTACTTTTGGAGAGGCATTGGCTCATCATGAAAAGAAATTAAATTCTTATTACAACATGGAAAAGCTTGAGAGATGGAAGATGGCTCTGCATCAAGTGGCTAACTTGTCTGGCTACCATTTCAAACATGGGGAAGGATATGAATATGAGTTTATTGAGAGGATTGTTGAGTTGGTTTGCAGCAAGATTAACCGTGTTGCTTTACATGTTTCGGATTACCCAGTTGGACTAGAGTCACAGGTGCTACAAGTAAAGATGCTTTTAGATGTTGGATCTGATGATGTTGTCCACATGGTAGGATTCCATGGACTTGGTGGAGTAGGGAAAACGACACTTGTTGTTGCAGTTTATAATTCCATTGCTGACCATTTTGAAGCTTTATGTTTTCTTGAAAACGTGAGAGAAGCTTCAAGTAAACATGGGTTACTACATCTCCAAAGCACCCTTCTTTCTGAAACAGTTGGAGAGATTAAGTTAACAAGTGTTAAAAAAGGAATTTCTATAATACAGCACAGGCTGCAGCAAAAGAAGGTTCTTTTGATTCTAGATGATGTTGACAAAGAGGAACAACTACAGGCACTTGCTGGAAGACCTCATTGGTTTGGTCTAGGCAGTAGAGTCATTATTACAACTCGAGACAAACAATTGTTAAAATCTCATGGGGTTGAAAGAACATATGAGGTTAAAGAATTGAATGAAGAAAATGCTCTTGAATTACTTACTTGGAAAGCTTTCAAGTTTGAAAATTTTGATCCAAGTTACAAGGATGTTTTGAATCTAGCAGTGACTTATGCCTCAGGCCTTCCACTGGCTTTGGAAGTGATAGGTTCCAACTTATTTGGAAGAAACATAGAACAATGGAAAAGTGGTTTGGATCAGTACAAGAAAATTCCTAAAATGGATATCCAGGATACACTTAAAGTGAGTTATGATGCTTTGGAAGAAGATGAACAAAGTGTTTTTCTTGACATTGCTTGTTTCTTCAAAAACTATGACTTGGCAGAGGTTGAAGACATACTTCGTGCTCATCATGGTCATAACATTAAACATCATATTGATGTGTTGGTTGAAAAATCTCTCATAAAGATTAGTTTGGATGGTAAAGTGACACTACATGATTTGATAAAAGACATGGGTAGAGAAATTGTGCGTAGAGAATCACCCAAAGAGCCTGGGAAACGTAGCAGGTTATGGTTCCTTGAGGATATAGTTCAAGTTTTAGAAGACAATAAGGGAAGTGGTAAGATTGAAACCATATGCATGGATTTCCCTTCATTTGAAGAAGTGGAAATAGAATGGGATGGAGATGCCTTCAAGAAGATGAAAAATCTCAGAACACTTATTATCAGAAATGGTCATTTCTCCACAGGTCCAAAACATCTTCCTAATTCTTTGAGAGTGATGGAATGGTGGAGATATCCTTCACAGAATTTTCCACAGGATTTTCATCCAAAGAAACTTTCTATATTCAAGTTACCATACTGTGAGTTTACATCACTAGAGTTGAATGACTTAGTAAGACAGAAGTTTGTGAATATGACAAGTTTAAATTTTGACGAATGTCGATATTTAAAACAAATACCTGATGTATCATGTCTAACACATTTGGAAAACTTGTCATTTCGTTGGTGTCCAAAGTTATCTTCACTTCACTACTCAGTTGGGTTCTTGGAAAAACTTAAAATCTTAGATGCAGAAGGTTGCTCCAAGCTCAAGAGTTTTCCTCCAATCAAGTTAACCTCTCTTGAGCAACTCAAACTTCGGTATTGTCATAGTCTTGAAAACTTTCCAGAAGTATTAGGAAACATGGAAAATGTAAGAGAACTTGACTTGAAAGATACTCCTATAAAAAAATTCCCACTTTCATTTCAAAATCTTACTCGACTGCAAAAGTTACATTTGTGTCTGAGTTGTGGAGTGATGGAAAATGGTTGTGATGGGGTTCCCCTTTCAAGCATTTGTATGATGCCAGAACTGGTTGATATTGTAGCAAATGAATGGAAAGGTGAGCTTTTCTGTAAAGCCAATGAAGGTGTAGAAAAAGTGAGCTCAATCTTCTATACAAATGTTCAATATCTTCAACTCAGATGTTGCAACTTAACAGATGATTTTTTTCTGACACTTCTCCCATGGTTTGCCAATATGAAGAACTTAGACCTATCAGGGAATAATTTCATTATCATTCCAGAATGCATCAAAGAATTCCACTTTTTAACTAGGCTTAATTTGAACTTTTGTGAGCAACTTCAAGAAATCAAAGGCATTCCTCCAAACCTGAAATATTTCTCTGCAATAGATTGCATATCCTTGACTTCCTCATGTAGAAGCATGTTACTAAATCAGGAACTGCATGAGGCTGGAAGCACCTTCTTTTATTTGCCAGGAGCCAAGATTGTAGAGTGGTTTGAGTTCCAAACGTTGGAAGTGCCAATTTGTTTTTGGTTTCATGGCAAACTCCCAGCCATGGTTATTTGTCTTGCAATGGAACGAATGTGTGAGTATTCCTCGTCAAAAGGTTGTAAATACAGACCCTTGGTGATCCATAGCACATTTAGACTCATGTCACCCATTGTGATCATCAATGGCAACGAACATTTGTTACAAACTTGGGAGATGATGGATGATTGTACTTGTGTTTTTGACCTGAGGGAAACAAAACTGAAAAATGATTTTGATGAACAACTTTTGGAAAATGAATGGAACCATGCTGAGGTTACATGTCGATATGTCAGTTTAGGCCAAACCTTAATAAAACATGGAATCCATGTATTGAAACAGGATAGTAGCGTGGAGGAGATTCGATTCACTGATCCTTGCAAAAAAAGAAATCTTGATATAATGAGCTCAATAGCCCAAAATCACAGCAGCAACAATTGTTGA 2883 0.3698 MGTFGEALAHHEKKLNSYYNMEKLERWKMALHQVANLSGYHFKHGEGYEYEFIERIVELVCSKINRVALHVSDYPVGLESQVLQVKMLLDVGSDDVVHMVGFHGLGGVGKTTLVVAVYNSIADHFEALCFLENVREASSKHGLLHLQSTLLSETVGEIKLTSVKKGISIIQHRLQQKKVLLILDDVDKEEQLQALAGRPHWFGLGSRVIITTRDKQLLKSHGVERTYEVKELNEENALELLTWKAFKFENFDPSYKDVLNLAVTYASGLPLALEVIGSNLFGRNIEQWKSGLDQYKKIPKMDIQDTLKVSYDALEEDEQSVFLDIACFFKNYDLAEVEDILRAHHGHNIKHHIDVLVEKSLIKISLDGKVTLHDLIKDMGREIVRRESPKEPGKRSRLWFLEDIVQVLEDNKGSGKIETICMDFPSFEEVEIEWDGDAFKKMKNLRTLIIRNGHFSTGPKHLPNSLRVMEWWRYPSQNFPQDFHPKKLSIFKLPYCEFTSLELNDLVRQKFVNMTSLNFDECRYLKQIPDVSCLTHLENLSFRWCPKLSSLHYSVGFLEKLKILDAEGCSKLKSFPPIKLTSLEQLKLRYCHSLENFPEVLGNMENVRELDLKDTPIKKFPLSFQNLTRLQKLHLCLSCGVMENGCDGVPLSSICMMPELVDIVANEWKGELFCKANEGVEKVSSIFYTNVQYLQLRCCNLTDDFFLTLLPWFANMKNLDLSGNNFIIIPECIKEFHFLTRLNLNFCEQLQEIKGIPPNLKYFSAIDCISLTSSCRSMLLNQELHEAGSTFFYLPGAKIVEWFEFQTLEVPICFWFHGKLPAMVICLAMERMCEYSSSKGCKYRPLVIHSTFRLMSPIVIINGNEHLLQTWEMMDDCTCVFDLRETKLKNDFDEQLLENEWNHAEVTCRYVSLGQTLIKHGIHVLKQDSSVEEIRFTDPCKKRNLDIMSSIAQNHSSNNC 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01172 960 Gene3D Ribonuclease Inhibitor 674 787 IPR032675 -
Viun4g01172 960 Gene3D - 65 225 IPR027417 -
Viun4g01172 960 SUPERFAMILY "Winged helix" DNA-binding domain 302 409 IPR036390 -
Viun4g01172 960 Gene3D - 231 315 IPR042197 -
Viun4g01172 960 SUPERFAMILY L domain-like 433 777 - -
Viun4g01172 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 325 IPR027417 -
Viun4g01172 960 Gene3D Ribonuclease Inhibitor 406 671 IPR032675 -
Viun4g01172 960 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 764 IPR044974 GO:0006952
Viun4g01172 960 Pfam NB-ARC domain 82 299 IPR002182 GO:0043531
Viun4g01172 960 Gene3D - 1 64 IPR035897 -
Viun4g01172 960 PRINTS Disease resistance protein signature 99 114 - -
Viun4g01172 960 PRINTS Disease resistance protein signature 556 572 - -
Viun4g01172 960 PRINTS Disease resistance protein signature 266 280 - -
Viun4g01172 960 PRINTS Disease resistance protein signature 173 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01172 Viun-Chr4 14750182 14754518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01172 11 635 WRKY Transcription Factor Family AT4G12020 30.663 1.11e-67 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01172 - - gmx:100784366 1406.73