Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01171 ATGGAGGGTACTGAACCTGATGTACAAAGGCATCCCCTGGAAGATGCAGAAAATGAATGTCCAATATCCGCCGAGGTGGTTTTGGGGCAAGAGAATCAGACTGGGAACCCCTGTGATTCTTCTGTTGAAGACGCTATTAAGATCATTGACACTGAGAATGAGTGTACAGGTCCAAATGTTTGTCCTGTTGACCATAGTCACATTAAAATTAATGATGAATGCCAGACATCAAATATTTTCCATGATGACAAATTTCATAATGATAATGTCAGTAGTGGAGAGTTGTGTGAGAACCCCTGTGCTACCTCTGTTAATATATCAATGACTAGTACTGATGTGAAAAATGAGGACGAAATATATGTGGCTCCAAAGATTGGTATGGAGTTTGAATCAGAAGACAATGCTTACAAATGTTATAGCATGTATGGTGTCCTGAAAGGTTTTAGCATTAGAAAGGATTTTGTCAACAAAAGTAGGATCAATGGTGCAGTGGTATCCAGAAGATATACCTGCCATAGACAGGGTTATCGGCCAAACAAAAATGGTACATACTTGAGGAAATTTCAGCAGGAAACAAGAACTGGTTGCTTGGCACACATGACTATTGCTCGTCAGCCGAATGGTAAATTTCAGGTCACTCATTTTGAAACTGAGCACAATCATGAGTTTGTAACACCCTGTACTGCTCATATGTTACCATCACAGAAAAAATTGAGTGTTGCTCAAGCTATTGAAGCAAACTTAACTATATCCGGGTTGGATGAGACACCAAAACTGGGAATGGGATTTGACTCAGATGAGGACGCATATGAATTTTATAATGCATATGCTGGACGAGTAGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAATTGATGGTGCTGTGGCATCTCGACGATTTACTTGCTTCAGAGAAGGTTTTCGGCAGAAAGACAAAAGAGATATGAACGCAAAGAAACCTCGGAAGGATACTAGAATTGGATGTTTGGCCCAAATGGTTATTTCTCGCCAACCTGATGGTAGGTATCATGTTACCCACTTTGAGGAAAAGCATAATCATGAACTTGTTGATGCATGTAGAGTGCACATGTTAAGATCACAACAAAAGGGGTTAACTGCTACTCAAATTGAAAAGAACATAATGGATGGATTGCCTACATCAACCTCTGAAACCAATTGCAAGGCTCGTCTTGATTATGATCCCGTCAACCGAGAGTATAAACTACCTTTCAAATGTAGTAGCAACATGAAGGAGGGAGATATTGAAAAGATTAAGCTTCACTTCCAAATCAAGCAAACAAAGAATCCTTCTTTCTTTTACGCATTCCAGGTTGATGCTGATGATCAAATAACTAATATATTTTGGGTTGATACAAAGATGATTGTTGATTACACTGATTTTGGTGATGTTGTTTGTTTTGATAGCAGTTATAAATACTATAAGGACTCCCGGCCATTTGTTCCATTCCTTGGTATAAATAATCACCAGCAAATGACTATCTTTGGGGCTGCACTTCTTCAGAATGAATCTGTAGAATCTTTGAAGTGGCTGTTTACAGTTTTCCTTGAGGCAATGTCTGGAAGAAAGCCAAAGACGATACTTACAGATCTAGATGTTGTAACAGCTGAAGCAATCAATGTCATACTACCCCAAACAAATCATCGAGTTTGTGTATGGCATGTCTATCAAGATGCCCTCAAGCATCTGAGTCATGTTTCTGCTGGATCTGATTCTTTCGTAAATGATTTAAGAAGCTGCCTTTTTCATCACGAGGAGGAGGATTATTTTGTTAATGAATGGAATGCTCTCCTGGACAAGTACAATCTGTGGGAAAATAAATGGTTGCAACAAATATTTGGAAGCAGAAATCGATGGGCTATAGCATATGGAAGACAATATTTTTGTGCTGACATAGAAAGCATGCTACTGAGAGAAAATCTTACTGGCAACCTGAAAAGGTACCTAAAGCATGACTCCGACATTCTTCCACTTTTCAAGTATCTTGTTAAAGTGGTTACTGATTGGCACTACAAGGAATTAGAAGCCAATTATGACATGAACCAGCGTATGCCACCGCTGCTGGGGGATATCGTTACGTTAAAGCATGCAAGAGCTCCATACACACCAAAGATATTTGAGTTATTTCAGAAAGAATATGAAGCATCTTTGAATCTAGTGATAAAGCATTGCACTGAAAATGGATCGTTGTATAATTATAAAGTTAGCGTATATGAACAGGCACGGGAATATTCAGTTACATTTGATTCTTCTGATGAGACAATCAGTTGTAGCTGTATGAAATTTGAGTATGTGGGGATGTTATGTTGCCATGCATTAAAAGTTCTTGACTATGTGAACATAAGGATTGTTCCATCTCGGTACATATTAAAGATATGGACAAAAGATGCTAGAGTTTGA 2427 0.384 MEGTEPDVQRHPLEDAENECPISAEVVLGQENQTGNPCDSSVEDAIKIIDTENECTGPNVCPVDHSHIKINDECQTSNIFHDDKFHNDNVSSGELCENPCATSVNISMTSTDVKNEDEIYVAPKIGMEFESEDNAYKCYSMYGVLKGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPNKNGTYLRKFQQETRTGCLAHMTIARQPNGKFQVTHFETEHNHEFVTPCTAHMLPSQKKLSVAQAIEANLTISGLDETPKLGMGFDSDEDAYEFYNAYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRDMNAKKPRKDTRIGCLAQMVISRQPDGRYHVTHFEEKHNHELVDACRVHMLRSQQKGLTATQIEKNIMDGLPTSTSETNCKARLDYDPVNREYKLPFKCSSNMKEGDIEKIKLHFQIKQTKNPSFFYAFQVDADDQITNIFWVDTKMIVDYTDFGDVVCFDSSYKYYKDSRPFVPFLGINNHQQMTIFGAALLQNESVESLKWLFTVFLEAMSGRKPKTILTDLDVVTAEAINVILPQTNHRVCVWHVYQDALKHLSHVSAGSDSFVNDLRSCLFHHEEEDYFVNEWNALLDKYNLWENKWLQQIFGSRNRWAIAYGRQYFCADIESMLLRENLTGNLKRYLKHDSDILPLFKYLVKVVTDWHYKELEANYDMNQRMPPLLGDIVTLKHARAPYTPKIFELFQKEYEASLNLVIKHCTENGSLYNYKVSVYEQAREYSVTFDSSDETISCSCMKFEYVGMLCCHALKVLDYVNIRIVPSRYILKIWTKDARV 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01171 808 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 113 241 IPR031052 GO:0006355
Viun4g01171 808 Pfam MULE transposase domain 473 566 IPR018289 -
Viun4g01171 808 Pfam SWIM zinc finger 742 788 IPR007527 GO:0008270
Viun4g01171 808 SMART 26again6 764 791 IPR006564 GO:0008270
Viun4g01171 808 Pfam FAR1 DNA-binding domain 139 224 IPR004330 -
Viun4g01171 808 Pfam FAR1 DNA-binding domain 271 359 IPR004330 -
Viun4g01171 808 ProSiteProfiles Zinc finger SWIM-type profile. 753 789 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01171 Viun-Chr4 14725039 14730495 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun4g01171 MULE 1.2e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01171 K17604 - gmx:102659753 1393.64