Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01163 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATCAATTTCATTCTCAACAATGGTATTCACTGTTGGAGAGTAGTTCCCAAGCTAGCAGGATTGTTGAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGACCAGACCTCAAGAGAGGTGGTTTTACTGAAATGGAAGAGGATCAAATTATACAACTACATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCCTCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATAAGAAAGAGGTTGAAGGTCCTTGGTTTGGACCCTTTGACCCTGAAGCCAAATGAGCAAAAGCAGCAACAGTGTGGTGAGGATGACAAACTCAACACAGAGAAACAGCAAAAAAGCACTTCAAAAGGGTGTGACCAAGGTGTGGAGAAGAAGCCCTTGGACATGCATGGCACCACAGGAAAAGAGCCAAAAACAGAAGACAAAGTTGAAGAAAACAAGGTTACATCATGGGATGACACCACTGGTTTTTTGAACAATTATGAAGTGTTGTGGTCAGAGTTGGAGTTGGGATCATGGATGAGCCAAGAAACCAAAGCCAGCACTAGCTCTTATTGTAGTTCTTGTTTCTCAGTGGATGATTCTAGCAACCTTTCTTCTGTGGGTGAATCCTCTTACCTTCAGCAAAATTCCTTTCAACAATGGGTTCAGGGTTTGGATTCTTTTTTCTCATGGGATAGCTTCAATCCAATTCACAGAGATTTTCCCTTCTTGGAAAATAGGCAATAA 840 0.4143 MGRQPCCDKVGLKRGPWTIEEDHKLINFILNNGIHCWRVVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIRKRLKVLGLDPLTLKPNEQKQQQCGEDDKLNTEKQQKSTSKGCDQGVEKKPLDMHGTTGKEPKTEDKVEENKVTSWDDTTGFLNNYEVLWSELELGSWMSQETKASTSSYCSSCFSVDDSSNLSSVGESSYLQQNSFQQWVQGLDSFFSWDSFNPIHRDFPFLENRQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01163 279 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun4g01163 279 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Viun4g01163 279 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
Viun4g01163 279 SMART sant 13 63 IPR001005 -
Viun4g01163 279 SMART sant 66 114 IPR001005 -
Viun4g01163 279 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun4g01163 279 MobiDBLite consensus disorder prediction 129 184 - -
Viun4g01163 279 CDD SANT 16 61 IPR001005 -
Viun4g01163 279 Gene3D - 69 155 - -
Viun4g01163 279 MobiDBLite consensus disorder prediction 155 184 - -
Viun4g01163 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun4g01163 279 MobiDBLite consensus disorder prediction 133 147 - -
Viun4g01163 279 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun4g01163 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun4g01163 279 FunFam MYB transcription factor 68 129 - -
Viun4g01163 279 CDD SANT 70 110 IPR001005 -
Viun4g01163 279 FunFam MYB transcription factor 11 67 - -
Viun4g01163 279 Gene3D - 11 67 - -
Viun4g01163 279 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01163 Viun-Chr4 14693196 14694490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01163 1 135 MYB Transcription Factor Family AT5G16600 76.471 1.15e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g01163 Myb_DNA-binding 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01163 K09422 - gmx:100819471 454.907