Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01123 ATGAAAAGTAAGGAGGGATTGAAAATAATTTTAAGGAGGAAAAAAGTTGCGGTATGGCACGGTATTGTTTCGTGGACTTGGGATGCTCAAGATGAAACGTGTGGGATCTGTAGAATGGCCTTTGATGGATGTTGTCCAGACTGTAAACTTCCAGGGGATGACTGTCCTCTGATTTGGGGTGTATGCAATCATGCGTTTCATTTGCATTGTATCCTGAAATGGGTTAATTCTCAAACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATGGCAGTTTAAAGGATAA 288 0.4271 MKSKEGLKIILRRKKVAVWHGIVSWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01123 95 CDD RING-H2_APC11 31 93 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Viun4g01123 95 PANTHER RING BOX 15 94 - -
Viun4g01123 95 SUPERFAMILY RING/U-box 15 94 - -
Viun4g01123 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 95 IPR013083 -
Viun4g01123 95 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 15 94 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Viun4g01123 95 FunFam Anaphase-promoting complex subunit 11 12 95 - -
Viun4g01123 95 ProSiteProfiles Zinc finger RING-type profile. 45 88 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01123 Viun-Chr4 13365412 13369805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01123 45 88 C3H Transcription Factor Family AT1G72220 41.304 1.53e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01123 K03358 - vum:124845759 186.808