LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g01105	ATGGCTGGAGGTGTTATTCGGCAGTTATTGAGGAGGAAACTCCAGTCTTGTTCTTCTAGTTCTTTCACGTCACCCGTTATCTCAAAGAATGATGGTGCCAACTCTACTGGCAGTAACTCCTTACGAGCATTTGCATTAGTAGGAGCTGGTGTCACGGGGATTTTAAGTTTTTCAACAACAGCATTAGCTGATGAAGCCGAGCATGGCCTGGCATGTCCCAGCTATCCATGGCCTCACAAGGGCATTCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCATGTCATTCCATGTCTTTGATATCATACCGTGATTTGGTTGGTGTCGCTTATACAGAAGAAGAAGTAAAGGCTATGGCAGCGGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGTGACCGCTTTCCTCAGCCATATGCAAATGAAGCCGCTGCTAGGTTTGCTAACGGTGGAGCCTATCCTCCAGATCTTAGTCTCATCACCAAAGCTCGACACAATGGTCAGAACTATGTGTTTTCACTTTTAACCGGATATCGTGACCCTCCTGCTGGCGTTTCGATTAGAGAAGGACTGCACTATAATCCTTACTTTCCCGGCGGGGCCATTGCTATGCCTAAAATGCTTAATGATGGTGCTGTTGAATATGAAGATGGCACCCCTGCTACAGAATCTCAGATGGGTAAAGATATTGTGTCATTCCTGACCTGGGCAGCCGAACCAGAGATGGAGGAAAGAAAACTGATGGGATTTAAATGGATATTTGTTCTATCACTTGCATTACTTCAAGCCGCCTATTACCGCCGCCTGCGGTGGTCCGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG	921	0.4625	MAGGVIRQLLRRKLQSCSSSSFTSPVISKNDGANSTGSNSLRAFALVGAGVTGILSFSTTALADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDIVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN	306

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g01105	306	FunFam	Cytochrome c1, heme protein	66	261	-	-
	Viun4g01105	306	SUPERFAMILY	Cytochrome c	70	260	IPR036909	GO:0009055\|GO:0020037
	Viun4g01105	306	Gene3D	-	262	305	-	-
	Viun4g01105	306	PRINTS	Cytochrome C1 signature	140	160	IPR002326	GO:0009055\|GO:0020037
	Viun4g01105	306	PRINTS	Cytochrome C1 signature	242	261	IPR002326	GO:0009055\|GO:0020037
	Viun4g01105	306	PRINTS	Cytochrome C1 signature	261	276	IPR002326	GO:0009055\|GO:0020037
	Viun4g01105	306	PRINTS	Cytochrome C1 signature	75	94	IPR002326	GO:0009055\|GO:0020037
	Viun4g01105	306	PRINTS	Cytochrome C1 signature	173	197	IPR002326	GO:0009055\|GO:0020037
	Viun4g01105	306	PRINTS	Cytochrome C1 signature	211	222	IPR002326	GO:0009055\|GO:0020037
	Viun4g01105	306	PRINTS	Cytochrome C1 signature	222	241	IPR002326	GO:0009055\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g01105	Viun-Chr4	12916951	12924057	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g01105	1	306	Chloroplast and Mitochondria Gene Families	AT3G27240	84.641	1.86e-180	498

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g01105	K00413		-	gmx:100803087	573.163

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