Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01098 ATGACAGTGCACACTATATATCGAGAGACACTTCATCCGAACACCCTTCACGTGGAGAAGATGGCAGCTACATTCCCACCCGTCACAGATCCAAGGAGCGGTTTCAATCCCGCTTCCAGAACCTTCCACAGCCTCAAACCACCACTTATTCTCCCTCCTCCCAACGCCGCCATCTCCGCGGCTTCCTACGTTCTCTCCCTCCGTTGCAACTCTCACTTTCCCGATTCCTCAACCGCCGTTATCGACTCTACCTCCGGCCACAGCCTCTCCTACGGCGAACTCATCCACCGCGCTGAGAACCTAGCCGCCAACCTCGCCACAGTTCTCAAACTATCAAAAGCCCACACCGCGCTCGTTCTCTCCCCTAACATCATCCAAGTTCCGATCCTCTGCTTCGCGCTCCTCTCCCTTGGCGTGGTCGTCTCCCCCGCGAACCCTCTTTCCACACGCTCCGAGCTCACGCGCCTCTTCCACCTCAGCAAACCCACCATCGTTTTCGCTGTGACTTCAAACGCCGAAAAAACACGCGAGTTCCATGTCCGTACGGTCCTCCTCGACTCGCCTGAGTTCGACTCGCTCACCAGGACTAAGATTCAGCCACTGAGTCCAACCGTGTCCCCCACGCCGGTGACTCAGTCCGACGTGGCAGCGATTCTGTACTCTTCCGGCACGACGGGGAAGGTGAAGGGCGTTATGCTTACTCACCGCAACCTAACCGCAATAGCCGCGGGAAACGACACGGTCCGCACGAAGCGCGCGGAGCCTGCGGTGTACCTCTATACGGTGCCATATTTCCACGTGTACGGTTTCACCTTCAGCCTCGGGGCGATGGTGCTGTCGGATACGGTGGTGATAATGGAGAGGTTCAGTTTGAGGGCAATGCTGAGCGCCACGGAGAGGTTCCGAGTGACGCACATTACAATGGTGCCGGCACTGGTTGTAGCTGTGACGAAGGACAAAGTGACAGACGGATACGATTTGACGTCGTTGGAAGGGATCGTGTGCGGTGGAGCCCCACTGAGGAAGGAAACCGATGAAGCTTTCAAAGCTAAGTTCCCCAAGGTCCTAGTCATGCAGGGATACGGTTTAACTGAGTCTGCGGTTACCCGAACGACTCCTGAGGAGGCTAATCACGTGGGAACAGTAGGTACACTCATACCCAACATAGAAGCAAGAATTGTTAACCCACAAACAGGGAAACTCATGTTTCCTGGTGAAAGGGGAGAGCTATGGATCAGAGGACCTTATGTTATGAAAGGTTATGTTGATGATCCAGAAGCAACTTCAGCAACTTTGGTGAATGGGTGGTTAAGGACTGGAGACCTTTGTTATTTCGATAATGATGGTTTTTTGTATGTTGTCGATAGGTTCAAAGAGTTTATCAAATACAAGGGCTACCAGGTTGCTCCAGCAGAGCTAGAAGAGTTGCTCCTATCTCACCCAGACATACTTGATGCTGCAGTTATTCCATACCCTGACAATGAAGCAGGCGAAGTGCCCATGGCGTTTGTTGTGAGACAACCTCAAAGTTCCCTTGGCGTAGCTCAAGTCATAGATTTTGTTGCCAAACAGGTTACACCATACAAGAAAATAAGGCGTGTAGCATTTGTTGATTCCATTCCCAAGAATGCTTCAGGAAAAGGATTTAAGTAA 1653 0.5221 MTVHTIYRETLHPNTLHVEKMAATFPPVTDPRSGFNPASRTFHSLKPPLILPPPNAAISAASYVLSLRCNSHFPDSSTAVIDSTSGHSLSYGELIHRAENLAANLATVLKLSKAHTALVLSPNIIQVPILCFALLSLGVVVSPANPLSTRSELTRLFHLSKPTIVFAVTSNAEKTREFHVRTVLLDSPEFDSLTRTKIQPLSPTVSPTPVTQSDVAAILYSSGTTGKVKGVMLTHRNLTAIAAGNDTVRTKRAEPAVYLYTVPYFHVYGFTFSLGAMVLSDTVVIMERFSLRAMLSATERFRVTHITMVPALVVAVTKDKVTDGYDLTSLEGIVCGGAPLRKETDEAFKAKFPKVLVMQGYGLTESAVTRTTPEEANHVGTVGTLIPNIEARIVNPQTGKLMFPGERGELWIRGPYVMKGYVDDPEATSATLVNGWLRTGDLCYFDNDGFLYVVDRFKEFIKYKGYQVAPAELEELLLSHPDILDAAVIPYPDNEAGEVPMAFVVRQPQSSLGVAQVIDFVAKQVTPYKKIRRVAFVDSIPKNASGKGFK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01098 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 37 545 - -
Viun4g01098 550 CDD 4CL 69 547 - -
Viun4g01098 550 Gene3D - 459 549 IPR045851 -
Viun4g01098 550 Gene3D - 55 458 IPR042099 -
Viun4g01098 550 FunFam 4-coumarate--CoA ligase 2 459 549 - -
Viun4g01098 550 Pfam AMP-binding enzyme 74 463 IPR000873 -
Viun4g01098 550 ProSitePatterns Putative AMP-binding domain signature. 218 229 IPR020845 -
Viun4g01098 550 Pfam AMP-binding enzyme C-terminal domain 472 547 IPR025110 -
Viun4g01098 550 SUPERFAMILY Acetyl-CoA synthetase-like 76 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01098 Viun-Chr4 12693810 12711418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01098 28 547 Monolignol Biosynthesis Gene Families AT5G63380 48.980 6.92e-176 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01098 K01904 - gmx:100784234 824.698