Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01097 ATGAGGCAGGACACAGATCCAAAGAGCGGCTTCAACCGCGTTTCCAGAACCTTCCACAGCCTCAGACCACCATTTCCCCTCCCTCCGCCCGATGCTGCCGTCTCCGCCGTATCATACACCCTCTCCCTCCGCCGCAACTCGCCGTTTCCAGACTCTGTCACTGCCTTTGTAGACGCCGCCACCGGGCACAGCATCTCTTACGAAGAACTCATCTACCGTGCCGAAACCCTAGCCGCAAACCTCGCCACAGTTTTCAAACTTTCCAAAGGAGACGCCGCGTTCGTTCTCTCCCCAAACCTTATCCAAGTTCCGATTCTCTACTTCGCGCTCCTCTCCCTCGGAGTCATCGTCTCCCCCGCGAATCCTCTGTCCACGCGCTCCGATCTCACGCGCCTCTTCCACCTCAGCAAACCTGCTATCGTCTTTACAGTGACTTCAATCGCGGAACGCGAGTATGGTATCCCTACCGTCCTCCTCGACTCCCCCGAGTTCGACTCGCTCACTCAGTCGAAGATTCACAATCCGAGTCCACTCGCATCCCCCGCGCGAGTGAATCAATCCGACTTGGCAGCGATTCTGTACTCCTCGGGGACCACGGGGATGGTAAAGGGCGTGATGCTCACGCACCGTAACTTAACAGCATTAGCCGCGGGATACGACGCCGTTCGAGTGAAGAGAAAGGAGCCCGCGGTGTTCCTGTTCACGATGCCGTTTTTCCACGTATACGGCTTCTCCTTCGGCTTCAAGGCGATGGTTCTGTCGGACACGGTGGTGATCATGGAAAGATTCAATTTGAAGGGAATGCTGAGCGCCGTGGAAAGGTTCCGGGTGACGAATCTCGCGGTGGTGCCGTCCCTGTTGGTCGCTTTGACGAAGGACGATGTCACCAACGAGTACGATTTGACGACGTTAGAGGGGATTGCATGCGGCTCGGCTCCACTCGGAAAGGATACCGCCGAGGCTTTCAAAGCCAAGTTCCCCAATGTGGTACTAATCCAGGGATATGGTTTAACCGAATCATGTGCCGGGGTTGTCCGAACCTCTCCGGAAGATGCTAAGCAAGTGGAAACAACAGGTAAACTGCTACCGGGGGTGGAAGCCAAAATTGTGAACCCAGACACAGGAGAAGCCATGCTTCCAGGTGAACAAGGAGAACTCTGGCTCAAATCACCTACTATTATGAAAGGTTATGTTGATGATCTAGAAGCAACTTCAGCAACTTTGGTGAATGGGTGGTTAAGGACCGGAGACCTTTGTTATTTCGATAATGATGGTTTTTTGTATGTTGTCGATAGGTTAAAAGAGTTGATCAAATACAAGGGTTACCAGGTTGCTCCTGCGGAGTTAGAAAAATGGCTCTTGTCTCACCCAGAGATAAATGATGCTGCAGTTATTTCATACCCCGATGAAGAAGCTGGGCAGGTTCCCATGGCGATTGTAGTAAGACAATCCCAAAGTTCCATCACTGAAGCAGAAATAATTGATTTTGTCGCCAAACAGGTTGCACCATACAAGAAAATAAGGCGCGTGGCATTTGTGGACGCAATACCAAAGAATGCCTTAGGAAAGATACTAAGGAGGGACTTGAAAAAACTTGTTACCTCTAGATTATAA 1614 0.5155 MRQDTDPKSGFNRVSRTFHSLRPPFPLPPPDAAVSAVSYTLSLRRNSPFPDSVTAFVDAATGHSISYEELIYRAETLAANLATVFKLSKGDAAFVLSPNLIQVPILYFALLSLGVIVSPANPLSTRSDLTRLFHLSKPAIVFTVTSIAEREYGIPTVLLDSPEFDSLTQSKIHNPSPLASPARVNQSDLAAILYSSGTTGMVKGVMLTHRNLTALAAGYDAVRVKRKEPAVFLFTMPFFHVYGFSFGFKAMVLSDTVVIMERFNLKGMLSAVERFRVTNLAVVPSLLVALTKDDVTNEYDLTTLEGIACGSAPLGKDTAEAFKAKFPNVVLIQGYGLTESCAGVVRTSPEDAKQVETTGKLLPGVEAKIVNPDTGEAMLPGEQGELWLKSPTIMKGYVDDLEATSATLVNGWLRTGDLCYFDNDGFLYVVDRLKELIKYKGYQVAPAELEKWLLSHPEINDAAVISYPDEEAGQVPMAIVVRQSQSSITEAEIIDFVAKQVAPYKKIRRVAFVDAIPKNALGKILRRDLKKLVTSRL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01097 537 Pfam AMP-binding enzyme 52 439 IPR000873 -
Viun4g01097 537 SUPERFAMILY Acetyl-CoA synthetase-like 54 534 - -
Viun4g01097 537 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Viun4g01097 537 FunFam 4-coumarate--CoA ligase 2 435 536 - -
Viun4g01097 537 Gene3D - 435 536 IPR045851 -
Viun4g01097 537 Gene3D - 30 434 IPR042099 -
Viun4g01097 537 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Viun4g01097 537 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 531 - -
Viun4g01097 537 CDD 4CL 46 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01097 Viun-Chr4 12576945 12587911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01097 6 532 Monolignol Biosynthesis Gene Families AT5G63380 49.088 1.21e-179 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01097 K01904 - gmx:100801143 826.624