Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01092 ATGTTCCAAGGTGGTAGAATGAGACATTTTTGTTACCTTTATCTTGTGGTTCTTTCATGGTTCTTTTTCATCCCAAACACTCATGAATTACAAGCTGTTCAGACACAAGCATTGTTGCAGTTAAGAGTTCATCTAGAGTATCCCTCCTCTTTGCAAATTTGGGAATATTACCAGGGGGACCTTTGTTCGCTCTCTCCATCTGCCAACCTGAGCATTAAATGTGAAGATGATGAGGTAACTGAGCTTAAAATTACGGGTGCAAAATCTTTGAAGCCACCACGGTTCAATGGATATGCAGTTCCTAATCAGACTCTATCCATGAATTTCTCCATTGATTCCTTTTTCATCACTTTGACAGAGTTGACCAGCTTAAGGGTTCTTAGCTTGGTGTCCTTGGGGATTTGGGGGCCACTTCCTGATAAGATTCACAGTTTCACTTTGCTTCAAGTTTTGGACCTGAGTTCCAATTTCTTATTTGGTGTCATTCCACCAAAAATATCCAAAATGGTAACGCTTCACACACTGACCCTTGATGACAATTATTTTAACACCACTATGCCCGATTCGTTTGATTCTCTGTCCAATCTGAATATCTTGAGTGTGAAGAGCAATGGCCTAAAGGGTTCATTCCCCTCCTCACTGGGAAAAATTAAGACACTTGAAGTTATTTCCTTGTCCCACAATGAGTTGTCTGGTGACTTGCCTGGTCTCAGTTCTCTCACTGGCCTACATGTTCTGGACTTAAGAGAAAACCATTTAGAATCTGAACTACCATTGTTGCCAAAATCTGTGGTCACTGTACTGCTTAGCAATAACTCATTTTCAGGAGAGATACCTAAGCAGTTTCAAGAACTGGATCAGCTTCAACATCTTGATCTTTCTTCAAATTTTCTCAGTAAGACACCACCATCTGCCTTGTTTTCTCTGCCACAGATAAGTTATTTGAATCTGGCAGGCAATGTGCTAAGTGGGACCCTCCCAGAAAAACTTAACTGTGGCAGCAAACTTGGGTTTGTGGACATTTCTCGTAACAAGTTAAGTGGTGGACTTCCTTCTTGCTTGGCGAATACATCTGACAGTAGAGTTGTTAGATATGCTGGAAACTGTTTATCTGTTGAATCTCAGAACCAGCACAGAGGGTCTTACTGTAAAGAATCTACCTCTGGATGGAAAAGCTTCAAGACATGGGAAGTAGCTGTAGTAATGGCCCTCATTGTTGTACTTGTTCTTGTGCTTTTGGTGTCTAGCATCTTCTTATGGAAAAAGTACCATTCCAGAAAGACAATTGGGCAAGATAACTCTTCAATAGCAGTTCCGTCGGAGATTCTTGCAAATGCCAGATTTATTTCTCAAACAGTGAAGCTAGGGACACAAACTGTTCCAACCTGTCGGCAATTTTCTATAGAGGAATTGAAGGAAGCCACGAAAAACTTTGACTTGTCAGCTTATATTGGTCAAGGCTCCATAGGGAAGATGTACAAAGGTAAACTGGAGAATGGATCCTATGTTGCAATACGGTCTTTGGCTCTGTCAAAGAAATGCTCAATTCAAACTCTCAGAGCTAAATTGGATTTACTCTCAAAACTTCATCATCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGATGGTGGAGGACAAGATGATTCCAATTCCCACAAACTTCATCTTGTATATGAGTATGTGCCAAATGGGAATTATCATGCCCATCTCTCAGAATTTTCTGTAGGGAAGGCACTTAAATGGTCTGATAGATTAGCAATTTTAATTGGAGTTGCAAAAGCAGTGCATTTCTTACATACTGGTGTTATACCTGGCTGCTTTAGTAACTTACTGAAGACAAAAAATGTGTTGCTTGATGAATACCGCATTCCAAAACTAAGTGACTATGGTATGTCCATCATCATAGAAGAACTTGAAAAGTTTGAGGCAAAGGGTGAGAAATCAAAGCCATGCCTAAGGACAAAAGCAGATGATGATGTTTATAATTTTGGATTTATCTTGTTCGAATCACTTGTTGGGCCCATAGCCTGCGACAAAGGTGAAACATTTTTCCTAAATGAAAAGGCATCGTTTGGGAGTCAAGATGGTAGAAGAAAGATTGTGGATCCTATAGTGTTGACCACTTGCTGTCAAGAGTCTTTATCAATTGCAATATCAATAACAACCAAATGCATTTCTCCAGAATCTTCATTTCGTCCCTCTTTTGAGGATGTCTTATGGAACTTACAGTATGCAGCTCAAGTCCAAGCCACAGCAGATGCAGACCACAAATCAGATTAA 2283 0.4008 MFQGGRMRHFCYLYLVVLSWFFFIPNTHELQAVQTQALLQLRVHLEYPSSLQIWEYYQGDLCSLSPSANLSIKCEDDEVTELKITGAKSLKPPRFNGYAVPNQTLSMNFSIDSFFITLTELTSLRVLSLVSLGIWGPLPDKIHSFTLLQVLDLSSNFLFGVIPPKISKMVTLHTLTLDDNYFNTTMPDSFDSLSNLNILSVKSNGLKGSFPSSLGKIKTLEVISLSHNELSGDLPGLSSLTGLHVLDLRENHLESELPLLPKSVVTVLLSNNSFSGEIPKQFQELDQLQHLDLSSNFLSKTPPSALFSLPQISYLNLAGNVLSGTLPEKLNCGSKLGFVDISRNKLSGGLPSCLANTSDSRVVRYAGNCLSVESQNQHRGSYCKESTSGWKSFKTWEVAVVMALIVVLVLVLLVSSIFLWKKYHSRKTIGQDNSSIAVPSEILANARFISQTVKLGTQTVPTCRQFSIEELKEATKNFDLSAYIGQGSIGKMYKGKLENGSYVAIRSLALSKKCSIQTLRAKLDLLSKLHHPNLVSLLGHCIDGGGQDDSNSHKLHLVYEYVPNGNYHAHLSEFSVGKALKWSDRLAILIGVAKAVHFLHTGVIPGCFSNLLKTKNVLLDEYRIPKLSDYGMSIIIEELEKFEAKGEKSKPCLRTKADDDVYNFGFILFESLVGPIACDKGETFFLNEKASFGSQDGRRKIVDPIVLTTCCQESLSIAISITTKCISPESSFRPSFEDVLWNLQYAAQVQATADADHKSD 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01092 760 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 315 744 - -
Viun4g01092 760 Pfam Protein tyrosine and serine/threonine kinase 480 739 IPR001245 GO:0004672|GO:0006468
Viun4g01092 760 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 562 760 - -
Viun4g01092 760 Gene3D Phosphorylase Kinase; domain 1 450 561 - -
Viun4g01092 760 ProSiteProfiles Protein kinase domain profile. 478 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g01092 760 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 31 262 - -
Viun4g01092 760 Pfam Leucine Rich Repeat 148 168 IPR001611 GO:0005515
Viun4g01092 760 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 441 561 - -
Viun4g01092 760 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Viun4g01092 760 Gene3D Transferase(Phosphotransferase) domain 1 562 760 - -
Viun4g01092 760 Gene3D Ribonuclease Inhibitor 31 262 IPR032675 -
Viun4g01092 760 Gene3D Ribonuclease Inhibitor 263 377 IPR032675 -
Viun4g01092 760 Pfam Leucine rich repeat 265 322 IPR001611 GO:0005515
Viun4g01092 760 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Viun4g01092 760 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 264 388 - -
Viun4g01092 760 SUPERFAMILY L domain-like 88 370 - -
Viun4g01092 760 SUPERFAMILY Protein kinase-like (PK-like) 458 743 IPR011009 -
Viun4g01092 760 ProSiteProfiles Leucine-rich repeat profile. 287 308 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01092 Viun-Chr4 12439769 12445119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01092 7 688 Miscellaneous Gene Families AT5G14210 55.000 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Viun4g01092 PK_Tyr_Ser-Thr 2.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01092 - - gmx:100799183 1280