Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01062 ATGGCAGCAGCATGCGTTGGTGGTGCTCTTCTTTCTGCTTTTCTGCAGGTTGCATTTCACAGGGTAACCTCTCCTAAACTTCTACACTTCTTTCGTGGAAGAAAGCTTGACGAAGCACTCCTCAGAAAACTCAACATCAAACTGTTGTCCATCAATTCTCTCGCTGATGATGCAGAGCAAAAGCAGTTCATGGATACACGTGTCAAGGCATGGCTTTCTGCTGTCAAAGATGTTGTGTTTGATGCAGAGGATCTCTTGGATGAAATAGACTACGAACTCACCAAACGTCAAGTGGAAGCTGAGTCTGAATGTCAAAGCCTCAGTAGCAAGGTATCAAGTTTCTTCAATTCTACTTTCAGTTCATTTAACAGGAAAATCGACTCAGGCTTGAAACAAGTCCTTGAGAACCTAGAATATCTTGCCAGCCAAAAGGGTGATCTTGGTTTGAAAGAGGCTACTTATTTTGGTCTTCAACCAGGCAGTGTCAGTGAAGTGCAACAAAAATTGCCATCAACTTCTTTGGTGGCTGAAAATGTTATTTATGGAAGAGATGATGACACAGAAACTATCTTTAATTGGCTCACATCTGAAACTCACAATCATAGCCAGTTATCAATACTTTCTATTGTGGGTATGGGTGGAGTGGGTAAGACCACACTTGCCCAACATGTGTACAATGATCCAAGGATGGAGGAGGTTCATTTTAGCATCAAAGCTTGGGTTTGTGTTTCAGATTATTTTGATGTTATGGTGGTGACAAGTACAATTCTTGAGGCAATCACTAAATCCAAAGATGATAGCAGAAACCTAGAAATGGCTCATGCAAGACTGAAAGAAAAATTGTCTGGGAAAAAATTCTTTCTCGTTTTGGATGATGTGTGGAACGAAAGACGAGATAAATGGGAAGCTGTGCAAACTCCTCTTAATTTTGGGGCAACCGGAAGTAAAATTCTCGTAACAACACGTAGCGAGAAAGTTGCTACTACAATGTGGTCAAGTAAAGTGCATCGCCTGATGCATTTACAAGAAGATCATTGCTGGGATGTTTTTGCAAAACATGCATTCCAAGATGATCATCCTCAATTGAATGCTGAGATGAAGGATATTGGCATAAAGATAGTTAAAAAGTGTAAAGGATTACCTATAGCCCTGAAAGCAATTGGAAGTCTTCTGCACACAAAGTCATCTTTTTCAGAACGGGAATGTGTACTGGAAAGTAAGATATGGGACTTACCGAGAGAAGAGAATGAAATTATGCCTGCCCTTTTACTGAGTTATCATCACCTTTCTTCGCATCTCAAGAGGTGTTTTACTTATTTTGCTCTATTTCCCAAAGATTACAAGTTTGACAAGGAGAGTATAATTTTGTTGTGGTTAGCTGAAAATTTTCTACACTGTCCTCAACATAATAAGAGCCCAGAAGAAATTGGTGAATTGTACTTTGATGATCTATTATCAAGGTCTTTCTTTCAACGGTCAAGCGGATTGGAATCATGTTTTGTCATGCATGACCTTCTCAACGATTTGGCAAAATATGTTTGTGGAGATATATACTTCAACTTAGAAGTTGATAAAGCATTATTTATACCAGAAAGGGCTCGTCATATTTCATTTGCAATCAATGACGTTAAGTATTTTGACAGTTCATATGATGCGAAAAGGTTGCGCACATTTATTCCACTTCCTACATTTATAAAATTGTCCCCTCTAAACGATCCATGGCAATGCAAGGTTTCATTTCATGAGTTGTTCTCCAAGTTTAAGTTCATACACACCTTATCTTTGCTATGTTGCTCTGGCCTCCTAGAGGTGCCTGACTCGATAGGTGATCTTAAACATCTACGTTCTTTAGACCTTTCCTGTACTCATATAAGAAAACTACCCGATTCAAGTTGTTTGCTCTATAACTTGCAAATACTAAAGCTTAACTATTGTCTCCTTTTGAAGGAGTTGCCTTCGAATTTGTACAAACTCAGCAATTTACGTTGCCTTGAATTTATAGGTACTTCAGTGAGAAAGATGCCAATGCATATGGGGAAGTTGAAGAATCTCCAAGTACTGAGTTCGTTCTATGTTGGCAAAAGTAGCGGTATTCAACAGCTGGTAGGGCTCAATCTTCATGGAGGGCTTTTAATTGGTGATATGCAGAATATTCTGAATCCCTCAGATGCTTTACAAGTAGATTTGAAAAATAAAAAGCACCTTGTAAAGCTAGAGTTAGAATGGAATTCAAACCAGATCCCCGACAATCCAAGGAAAGAAAAACAAGTACTCGAGTATCTACAACCTCCCAAACACTTAAAGAATTTCTCAATCAGTCACTATGGTGGTACACAATTTCCAAGTTGGTTATCTGATAGTTCCTTATCAAACGTGGTGTCATTAAGATTGATAGGTTGTAAATATGTTCTGCAATTGCCTCCCCTTGGGCTTTTGCCATTCCTCAAGGAGCTGACAATTATAGAGCTTGATGGGATAGTGGGTGTTGGTGCTGAGTTCCATGGGAGTAGCTCTTCTTCATTTACATGCTTGGAAACATTGTATTTCTATAATATGAAGGAGTGGGAAGAATGGGATTGTGAAACTCCTTTCCCACGTCTTCAACATCTTTCTATAGTACATTGCCCCAAGCTCAAAGGGCTGCCAAACCAACTTCTTCACGTAAAGCAAATAATTATCTGTGAATGTGAAAGGTTCACCATTAGCGGACACAACACGGAATCATCAACCCTGGAAAGGATAGGGGATACCATAAATAATAATTCTCTTGAAGTCTTACACATTTATTCTTGTCTGTACATTAATATTCCATTGAGACTTCGCTACAATTTACTTGTAACACTGGATATAGATGGAGGCTTTGACTCTCCAATGACCTTTCCTCTAGATTTCTTCCCAAAACTTTGTTCACTCAAACTCAGGTGTTGTAATCTGCAAATGATTTCACAGGATCACACTCATAATCATCTCAAGGATCTGGATATCAGCAAATCACCTCAATTTGAATCATTTCCCATGGAAGGATTATCTGCCCCCAAGCTAGTAAAATTTAGTATTAAAGAATTGAAGAACTTGAAATTATTGCCTAAACGCATGGATATCCTCCTTCCATCTCTTACAGACATACGAATATTAGACTGTCCACAAGTGGAGTTGTGCTCTGATGGAGGTTTGCCATCAAATCTAAATACCATGGATCTCTCAGACTGCTCCAAATTTATGGCCTCAATGAAAATGGCTTTGGGAGCCAACAACTCTCTAGAAGTCTTGTCTGTTCAAAAATTGGATGTGGAGTCTTTTCCTGATGAAGGAATTGTTGTTGTTTAA 3327 0.3889 MAAACVGGALLSAFLQVAFHRVTSPKLLHFFRGRKLDEALLRKLNIKLLSINSLADDAEQKQFMDTRVKAWLSAVKDVVFDAEDLLDEIDYELTKRQVEAESECQSLSSKVSSFFNSTFSSFNRKIDSGLKQVLENLEYLASQKGDLGLKEATYFGLQPGSVSEVQQKLPSTSLVAENVIYGRDDDTETIFNWLTSETHNHSQLSILSIVGMGGVGKTTLAQHVYNDPRMEEVHFSIKAWVCVSDYFDVMVVTSTILEAITKSKDDSRNLEMAHARLKEKLSGKKFFLVLDDVWNERRDKWEAVQTPLNFGATGSKILVTTRSEKVATTMWSSKVHRLMHLQEDHCWDVFAKHAFQDDHPQLNAEMKDIGIKIVKKCKGLPIALKAIGSLLHTKSSFSERECVLESKIWDLPREENEIMPALLLSYHHLSSHLKRCFTYFALFPKDYKFDKESIILLWLAENFLHCPQHNKSPEEIGELYFDDLLSRSFFQRSSGLESCFVMHDLLNDLAKYVCGDIYFNLEVDKALFIPERARHISFAINDVKYFDSSYDAKRLRTFIPLPTFIKLSPLNDPWQCKVSFHELFSKFKFIHTLSLLCCSGLLEVPDSIGDLKHLRSLDLSCTHIRKLPDSSCLLYNLQILKLNYCLLLKELPSNLYKLSNLRCLEFIGTSVRKMPMHMGKLKNLQVLSSFYVGKSSGIQQLVGLNLHGGLLIGDMQNILNPSDALQVDLKNKKHLVKLELEWNSNQIPDNPRKEKQVLEYLQPPKHLKNFSISHYGGTQFPSWLSDSSLSNVVSLRLIGCKYVLQLPPLGLLPFLKELTIIELDGIVGVGAEFHGSSSSSFTCLETLYFYNMKEWEEWDCETPFPRLQHLSIVHCPKLKGLPNQLLHVKQIIICECERFTISGHNTESSTLERIGDTINNNSLEVLHIYSCLYINIPLRLRYNLLVTLDIDGGFDSPMTFPLDFFPKLCSLKLRCCNLQMISQDHTHNHLKDLDISKSPQFESFPMEGLSAPKLVKFSIKELKNLKLLPKRMDILLPSLTDIRILDCPQVELCSDGGLPSNLNTMDLSDCSKFMASMKMALGANNSLEVLSVQKLDVESFPDEGIVVV 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01062 1108 ProSiteProfiles Leucine-rich repeat profile. 613 634 IPR001611 GO:0005515
Viun4g01062 1108 FunFam Probable disease resistance protein At1g61300 162 335 - -
Viun4g01062 1108 Coils Coil 41 61 - -
Viun4g01062 1108 SUPERFAMILY RNI-like 863 1098 - -
Viun4g01062 1108 PRINTS Disease resistance protein signature 377 391 - -
Viun4g01062 1108 PRINTS Disease resistance protein signature 206 221 - -
Viun4g01062 1108 PRINTS Disease resistance protein signature 280 294 - -
Viun4g01062 1108 PRINTS Disease resistance protein signature 609 625 - -
Viun4g01062 1108 Pfam NB-ARC domain 184 426 IPR002182 GO:0043531
Viun4g01062 1108 SUPERFAMILY L domain-like 501 889 - -
Viun4g01062 1108 Gene3D Ribonuclease Inhibitor 704 898 IPR032675 -
Viun4g01062 1108 Gene3D Ribonuclease Inhibitor 899 1055 IPR032675 -
Viun4g01062 1108 Gene3D - 431 512 IPR036388 -
Viun4g01062 1108 Gene3D - 35 126 - -
Viun4g01062 1108 Pfam Rx N-terminal domain 11 104 IPR041118 -
Viun4g01062 1108 Gene3D Ribonuclease Inhibitor 568 703 IPR032675 -
Viun4g01062 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 439 IPR027417 -
Viun4g01062 1108 Gene3D - 161 335 IPR027417 -
Viun4g01062 1108 Gene3D - 340 430 IPR042197 -
Viun4g01062 1108 PANTHER DISEASE RESISTANCE PROTEIN RP 41 875 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01062 Viun-Chr4 11411189 11414856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01062 207 443 WRKY Transcription Factor Family AT5G45050 24.082 7.62e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01062 - - gmx:100777280 1379.39