Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01052 ATGAGTAACTCACTACACTTGAGGAATGGTGGTAGTTTACCTTCTGTTCCTGTTCTTGCTCTCCAGTGTTCAAGCACTTTGGGGTTCATGGGTCATGTTGGAGGCACAGAAAGTGAAAGTTCTGGCATGCCCTTTAAGAATTTGAACTCCTCAGTGATTCAACACCAGGAGAAAGAAGAAGAATCTTCTGGGGTTGAAGCCATGAGTTTGTCTCTGAAACCTGGTGAAGAACTTGAAGCTAATAGTTATTCTGATACAGGGAAACTCAGACACGCTAAGCTTTGTGCAAGAGGGCATTGGAGGCCAGTTGAAGATGTCAAACTTAAAGAGCTTGTTGCACAATTGGGACCTCAAAATTGGAACTCCATAGCAGAACATCTTCCAGGAAGATCAGGTAAAAGTTGCAGACTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAAAGGGTTTCAGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACTGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAAAAATCATGTGTCTACAGAAGGAGAAAACCCACAATTCAGATCCTTCCACCAAAGAATTTGGATTTGATCTTGTCAATGAATGGAGGGAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGCCTCAATAGGAACCAACCTCTCCTTCACTCCCTCTTCAGCAACACCAACTCCTCTGCCATTTCTAAACCATTGTCCTGTTCAGAATCTCCAACCCTTTGGTGGTGCTCTATTGGGTTTATCTGGAGATAGCAGAGAACCAGTTAGGGAAGTGAATTTTGGCATGTATTTTGGTGGTTGGAGGAGTTCATTTGAGGCAGGGCACATGAGAAGACTAATGGGTGTGGATCAATCTCATTATTCAGAGTCAAATTCATCAGAAGTTTCAGTATCTGAGTCAGTTGCCACCAACAACACTACCAATCTTTCAATTTCTGGGGAAAATGAAAACATCATGGGTAACAACAAGGTCAATAACATGGCATTCATTGACTTTCTTGGAGTAGGAGCTGCATAG 1122 0.426 MSNSLHLRNGGSLPSVPVLALQCSSTLGFMGHVGGTESESSGMPFKNLNSSVIQHQEKEEESSGVEAMSLSLKPGEELEANSYSDTGKLRHAKLCARGHWRPVEDVKLKELVAQLGPQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKGFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVYRRRKPTIQILPPKNLDLILSMNGGSESTISSTIIDESASIGTNLSFTPSSATPTPLPFLNHCPVQNLQPFGGALLGLSGDSREPVREVNFGMYFGGWRSSFEAGHMRRLMGVDQSHYSESNSSEVSVSESVATNNTTNLSISGENENIMGNNKVNNMAFIDFLGVGAA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01052 373 PANTHER MYB PROTEIN-RELATED 97 322 - -
Viun4g01052 373 FunFam MYB transcription factor 97 148 - -
Viun4g01052 373 CDD SANT 152 191 IPR001005 -
Viun4g01052 373 Gene3D - 97 148 - -
Viun4g01052 373 Gene3D - 151 209 - -
Viun4g01052 373 CDD SANT 100 141 IPR001005 -
Viun4g01052 373 SUPERFAMILY Homeodomain-like 97 190 IPR009057 -
Viun4g01052 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 143 IPR017930 -
Viun4g01052 373 ProSiteProfiles Myb-like domain profile. 144 194 IPR001005 -
Viun4g01052 373 SMART sant 96 145 IPR001005 -
Viun4g01052 373 SMART sant 148 196 IPR001005 -
Viun4g01052 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 198 IPR017930 -
Viun4g01052 373 Pfam Myb-like DNA-binding domain 97 143 IPR001005 -
Viun4g01052 373 Pfam Myb-like DNA-binding domain 150 192 IPR001005 -
Viun4g01052 373 ProSiteProfiles Myb-like domain profile. 97 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01052 Viun-Chr4 11218946 11220910 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01052 96 216 MYB Transcription Factor Family AT1G69560 76.860 1.61e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g01052 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01052 K09422 - gmx:100791795 325.865