Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01049 ATGAGTGCTGAAACGAATGTTTTCCCTTCACTTCCTGTCACTGTTATTGGTCTCCAGTGTTTCAACATTTTAGGGGTGATGGGTCATGTTGGAGGCATCAAATCTGAAAGTTCTGATATACACTTTCAGATTCTGAACGAGGAAGAAGAATCTTCTGGGGTTGAAGCCACGAGCTTGTCTTTGAAACCTGTTGAAGAGCTTGAAGCTAATAGTTATTCTGCTGCAGGGAAACTCAGACACACTAAGCTTTGTGCAAGAGGACATTGGAGGTCAGCTGAAGATGCCAAGCTTAAAGAGCTTGTTGCACAATTTGGACCTCAAAATTGGAACTCAATGGCAGAACATCTTCCAGGAAGATCAGGTAAAAGTTGCAGGCTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAAAGGGTTTCAGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGAACTGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGGATGCAAAGGGAAAAGTCATGTGTCTACAGAAGGAGAAAACCAACATTTCAGATCCATCCATCAAAGAATTTGGATTTGATCTTGCCACTGAATAGAGGCAGTGAATCAACCATTTCAAGCACCACCATTGATGAATCTGCCTCAACAGGAACCAACCTCTCCTTCACTCCCTCTTCAGCAAAACCAACACCTCTTCCTTTACACAACCATTGTCCTGTTCAGAATCTCCAAGCTTTTAGTGCTCTAATGGGTTTATCTGGAGAAAGCAGGACACCAGCCAGGGATGTGAGTTTCTGCAAAAATTTTGGGGGTGGGAAAGGTTCATGTGAGGCTGGACACATGGGAAGGGTAATGGGTGTGGACCAATCTCATTACTCAGATTCAAACTCATCAGAAGTTTCAGCATCTGAATCATTTGCCACCAACAGGATTACCAATTTATCAATGCATGGGGAAAGTGATACCAGCACCAACATGTTATTCATTGATTTTCTTGGAGTAGGAGCTACATAA 1068 0.427 MSAETNVFPSLPVTVIGLQCFNILGVMGHVGGIKSESSDIHFQILNEEEESSGVEATSLSLKPVEELEANSYSAAGKLRHTKLCARGHWRSAEDAKLKELVAQFGPQNWNSMAEHLPGRSGKSCRLRWFNQLDPRINRKGFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARMQREKSCVYRRRKPTFQIHPSKNLDLILPLNRGSESTISSTTIDESASTGTNLSFTPSSAKPTPLPLHNHCPVQNLQAFSALMGLSGESRTPARDVSFCKNFGGGKGSCEAGHMGRVMGVDQSHYSDSNSSEVSASESFATNRITNLSMHGESDTSTNMLFIDFLGVGAT 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01049 355 SMART sant 85 134 IPR001005 -
Viun4g01049 355 SMART sant 137 185 IPR001005 -
Viun4g01049 355 ProSiteProfiles Myb-like domain profile. 133 183 IPR001005 -
Viun4g01049 355 ProSiteProfiles Myb-like domain profile. 86 132 IPR001005 -
Viun4g01049 355 Gene3D - 140 201 - -
Viun4g01049 355 Gene3D - 86 137 - -
Viun4g01049 355 CDD SANT 141 180 IPR001005 -
Viun4g01049 355 SUPERFAMILY Homeodomain-like 86 179 IPR009057 -
Viun4g01049 355 PANTHER MYB PROTEIN-RELATED 86 278 - -
Viun4g01049 355 CDD SANT 89 130 IPR001005 -
Viun4g01049 355 MobiDBLite consensus disorder prediction 226 246 - -
Viun4g01049 355 Pfam Myb-like DNA-binding domain 89 149 - -
Viun4g01049 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 132 IPR017930 -
Viun4g01049 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 187 IPR017930 -
Viun4g01049 355 FunFam MYB transcription factor 86 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01049 Viun-Chr4 11086588 11088339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01049 85 208 MYB Transcription Factor Family AT1G69560 75.000 2.10e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g01049 Myb_DNA-bind_6 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01049 K09422 - gmx:100791795 329.331