Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01035 ATGGCGAGGAAGCGAAAACAGCCACCTCGTCCCGCCAAATCGGCAGAGCCGGCTCTCAAACAGCAACAACAAGAACAGCCCCAGTTGAATGTAGAATCAGAGTATAAAGAAGAGGAACAATACGAAGAAGAAGAAGAAGAAGAAGAAAGCCAGGAAATTGAAGAAGAATTAGCGCCAAGCAATGAAACCTCGAAGCCCCTCACCACGTCTTCATCCTCTCCAAGCGACGATGAGGAGCCAATCCAGAACCTTCTAGAACCTCTCGGCAAGAATGAGATCGCGAAATTTCTCATCGAGGCCGCCTCCAAGCACCGCGACGTGGCAGACCGGATACGCCGCACCGCCGACGCCGACCCCGCGCACCGCAAAATCTTCGTGCACGGCCTCGGCTGGGACACCACCGCAGACACCCTTACCAGCGCGTTCTCCCCCTACGGCGACATCGAGGACTGCAAGGCCGTCGTGGACAAGGCCACTGGCAAGTCCAAGGGCTACGGCTTCGTCCTCTTCAAGACCCGTCGCGCTGCGCGCAACGCGCTCCGCGAGCCGCAGAAAAGGATCGGCAACCGCACTGCCGCATGCCAGCTGGCGTCCGTGGGCCCAGTCCAGTCGTCGCCGGCGACGATTTCGACGGCGCCGGGGGCTTCGGATTTCTCGCAGAGGAAGATCTATGTGAGCAATGTGAGTGCGGAATTGGACCCGCAGAGGCTTCTGTCGTTTTTTGCGCAGTTTGGGGAGATTGAGGAAGGACCTTTAGGGCTTGATAAGGTAACTGGGAAACCGAAGGGGTTCTGTTTATTTGTTTATAAGAGTGTGGAGGGTGCAAAGCGGGCTTTGGAGGTGCCGCACAAGAAGTTTGAGGGGCATATTTTGCACTGCCAGAAGGCAATTGATGGTACGAAGCAGCAGCGAGTGGGGGTGGTGCAGGGTAGTTCTCAGAGCGGTGGGTTTGTTGGTATGGGGGCAGTACCAATGCCGGGGCACTTGATGGCTCCGGCAGGGCCAGCGGTAGGAGGAGGTGTTGCAGGGGCGGCGGTGCAGCCAGTTAATCCGGCAGTTGGGCAGGCACTGACGGCATTGCTGGCATCTCGGAATGCCGGGTTGCAATTGAATGGGTTCTTGGGTATTGGGTCACCGGCGACTAACACTGGCAGTTATGTTGGACAAGGGAGTGTGAATCCTGGGGCTGTTGGTGTTGGTGGGTATGGGAATCAAGTAGCGTTGCCAAGTTCATATGCAAGCCAGCAGCAGGTGGGGATAGGTGGATCTGGAAGAGTGCAGCAGCCTCATGGTGTGGGACAGTATGGTGGAGTTGTGCCTTACATGGGCCACTAG 1335 0.57 MARKRKQPPRPAKSAEPALKQQQQEQPQLNVESEYKEEEQYEEEEEEEESQEIEEELAPSNETSKPLTTSSSSPSDDEEPIQNLLEPLGKNEIAKFLIEAASKHRDVADRIRRTADADPAHRKIFVHGLGWDTTADTLTSAFSPYGDIEDCKAVVDKATGKSKGYGFVLFKTRRAARNALREPQKRIGNRTAACQLASVGPVQSSPATISTAPGASDFSQRKIYVSNVSAELDPQRLLSFFAQFGEIEEGPLGLDKVTGKPKGFCLFVYKSVEGAKRALEVPHKKFEGHILHCQKAIDGTKQQRVGVVQGSSQSGGFVGMGAVPMPGHLMAPAGPAVGGGVAGAAVQPVNPAVGQALTALLASRNAGLQLNGFLGIGSPATNTGSYVGQGSVNPGAVGVGGYGNQVALPSSYASQQQVGIGGSGRVQQPHGVGQYGGVVPYMGH 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01035 444 MobiDBLite consensus disorder prediction 61 79 - -
Viun4g01035 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 191 IPR000504 GO:0003723
Viun4g01035 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 291 IPR000504 GO:0003723
Viun4g01035 444 Gene3D - 213 322 IPR012677 -
Viun4g01035 444 SUPERFAMILY RNA-binding domain, RBD 114 203 IPR035979 GO:0003676
Viun4g01035 444 MobiDBLite consensus disorder prediction 36 56 - -
Viun4g01035 444 Coils Coil 31 56 - -
Viun4g01035 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723
Viun4g01035 444 SUPERFAMILY RNA-binding domain, RBD 214 317 IPR035979 GO:0003676
Viun4g01035 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 28 301 - -
Viun4g01035 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 310 IPR000504 GO:0003723
Viun4g01035 444 MobiDBLite consensus disorder prediction 1 82 - -
Viun4g01035 444 SMART rrm1_1 222 294 IPR000504 GO:0003723
Viun4g01035 444 SMART rrm1_1 123 195 IPR000504 GO:0003723
Viun4g01035 444 Gene3D - 12 206 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01035 Viun-Chr4 10989294 10993080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01035 217 296 C2H2 Transcription Factor Family AT2G19380 35.000 2.08e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01035 K12741 - rcu:8268908 435.647