Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01027 ATGGGGAGCAGAAAGGAAGAAGAGAAGAATGAGAAAATTATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGCAACAGTTTGGGACCACAATATGTATGTACAAGTTTTTGGACTTTCATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTCTCAATGGCAAAATTCACTTCACAAGAAGTTGATGCTCTTCAAAGTGGAGGTAACCAGCGTGCAAGGGAAATATACTTGAAAAATTGGGATTTCCAAAGGCAGCGGTTGCCAGATAACAGCAATGTTAATAAAATAAGGGAATTTATAAAGAGTGTATATGTGGATGGAAGATATGCTGCAGTGAAGTCTTCAGAAAAGCCCCCAAGAGATGCACAGAGCCCTGGGATTCATGAAGATGATAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAGGATCGGAAGTATGGAAAACAAGCAGCTGCACTCACCAGGAAGCCTGGTTCAGATAAAGCTCGATATGAAGGGAAAATATCTAGTATTATCTACAGTCCTGGCCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAAGGATCTGGTCCAAGAATTTCTGATTTTTCTGTTTTTAGTGGTGGCGAACAATTCAAATCTGATGTTCACTCTCCCAATTTCTATAAAGATATTAAGATTAGCAGTCCATCCTATCAAAGACGCTCTGGTTCCAGTTCAAGTGAAGATGTGTGGTCCCAAGCAAGAAATGCATCTCTGGAAACTAATGTCAATGCCAAGATAGATGGAAATGGAATTCGTCCTCCACAGATAACTGCATCAGAGCAATCAGGAGACAACAAAATTTCATCCTTGAGATCTTATAATTCTGGCAGTTTAGTTGATTTTTTCTCTGAACCAGTTCAACCTTCAGAACCACTTCAGAATAAAGCATTTGGCATTCCACGACCCCCTGGTCCTACAAGATCTGTTAGCATGGACCTATCCAAGGCACCATTGGAATCAGCAGCAGCGGCATCTCAAGCTCCAACAGTGGATCTGTTTCAATCATCTTTTTCATCTGCAATTCCATTTTTCAATGAGAATCAACTTACTCAAGCATCCCAACCTGCATCTATTGAATTTTTTGCGGATCTCTCTCAGAAGCCTTCTACTGTAAACTTAAATGAAAAGGCACTGGATTTAACTGTCCCTAAAAATGAAGGATGGGCAACTTTTGATATGCCTCAGAGCACCTCATCCACTGCACAAGTGGAAATTCCAGCTACTGTACCCTTAAGTACTGAATCTTTACAAGAAAGATTTGATCCCTTTTCCACCTCAAATGCAAACACACAATGGCCATCTTTTGATTTTTCTAGTGTGAGTATGCATTCTTCACTTACATCTAATTTATGGCATGATGGTGTGTGGAATAGTGAAGAACAAGTTTCCGCTATGTCAGCAAACACTCAACCATGGAATGCATTTGAAGGTTCTGGTGGCCATCATCCTGTGGATGCCCTTGGTCAAGGATTACAATTGCACAATTTTCCCTCAGCTGATAATCAAATTTTGGGATTAAGAGACTCTGAGGGGTCCAAAAGTAACGACGATAAAGGCATTGTCCCTGTTGATGGATTTGAAAATCATGACATCCCATCGCATGTCAGTGATTCAGCATATCCACCATCCATGCTTCCTTCAATGGGAGACATTGAACCTATTGGAATGAAATGTAAATCAACTAATCCATTTGATTTTCCTCATGAATCTGATGTAGCTCACAACAATATGTTTCTTGATATGAGCTCTTTGCAAGATGCACTGCCAGATGCCCTGTTTCCAACCTCCTTCCATAGTGGTATAGCTGAATCTTGGCTTCCCCAAAACACGGTGACCCCTTATATTTCCTCTTCTGGTGAAGGTGGTTTGTCATTCATGGCTGTGCAATCACCAGGTTCTCAAATACAGAACATCCAGACACCAGAACCAGTTGCTTCGTTTGGGGGAAACCCTTTTGCATAG 2058 0.4106 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQSGGNQRAREIYLKNWDFQRQRLPDNSNVNKIREFIKSVYVDGRYAAVKSSEKPPRDAQSPGIHEDDRRASSYHSYSQSPPYDYQYEDRKYGKQAAALTRKPGSDKARYEGKISSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVFSGGEQFKSDVHSPNFYKDIKISSPSYQRRSGSSSSEDVWSQARNASLETNVNAKIDGNGIRPPQITASEQSGDNKISSLRSYNSGSLVDFFSEPVQPSEPLQNKAFGIPRPPGPTRSVSMDLSKAPLESAAAASQAPTVDLFQSSFSSAIPFFNENQLTQASQPASIEFFADLSQKPSTVNLNEKALDLTVPKNEGWATFDMPQSTSSTAQVEIPATVPLSTESLQERFDPFSTSNANTQWPSFDFSSVSMHSSLTSNLWHDGVWNSEEQVSAMSANTQPWNAFEGSGGHHPVDALGQGLQLHNFPSADNQILGLRDSEGSKSNDDKGIVPVDGFENHDIPSHVSDSAYPPSMLPSMGDIEPIGMKCKSTNPFDFPHESDVAHNNMFLDMSSLQDALPDALFPTSFHSGIAESWLPQNTVTPYISSSGEGGLSFMAVQSPGSQIQNIQTPEPVASFGGNPFA 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01027 685 MobiDBLite consensus disorder prediction 134 148 - -
Viun4g01027 685 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Viun4g01027 685 MobiDBLite consensus disorder prediction 124 161 - -
Viun4g01027 685 MobiDBLite consensus disorder prediction 286 300 - -
Viun4g01027 685 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Viun4g01027 685 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Viun4g01027 685 PANTHER ARFGAP/RECO-RELATED 1 685 IPR044820 GO:0005096
Viun4g01027 685 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Viun4g01027 685 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Viun4g01027 685 MobiDBLite consensus disorder prediction 276 300 - -
Viun4g01027 685 CDD ArfGap_AGFG 11 123 - -
Viun4g01027 685 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Viun4g01027 685 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Viun4g01027 685 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Viun4g01027 685 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01027 Viun-Chr4 10761387 10768802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01027 14 137 C2H2 Transcription Factor Family AT3G07940 32.090 5.98e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01027 K15044 - gmx:100788316 1082.01