Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01026 ATGGGGAGCAGAAAGGAAGAAGAGAAGAATGAGAAAATTATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGCAACAGTTTGGGACCACAATATGTATGTACAAGTTTTTGGACTTTCATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTCTCAATGGCAAAATTCACTTCACAAGAAGTTGATGCTCTTCAAAGTGGAGGTAACCAGCGTGCAAGGGAAATATACTTGAAAAATTGGGATTTCCAAAGGCAGCGGTTGCCAGATAACAGCAATGTTAATAAAATAAGGGAATTTATAAAGAGTGTATATGTGGATGGAAGATATGCTGCAGTGAAGTCTTCAGAAAAGCCCCCAAGAGATGCACAGAGCCCTGGGATTCATGAAGATGATAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAGGATCGGAAGTATGGAAAACAAGCAGCTGCACTCACCAGGAAGCCTGGTTCAGATAAAGCTCGATATGAAGGGAAAATATCTAGTATTATCTACAGTCCTGGCCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAAGGATCTGGTCCAAGAATTTCTGATTTTTCTGTTTTTAGTGGTGGCGAACAATTCAAATCTGATGTTCACTCTCCCAATTTCTATAAAGATATTAAGATTAGCAGTCCATCCTATCAAAGACGCTCTGGTTCCAGTTCAAGTGAAGATGTGTGGTCCCAAGCAAGAAATGCATCTCTGGAAACTAATGTCAATGCCAAGATAGATGGAAATGGAATTCGTCCTCCACAGATAACTGCATCAGAGCAATCAGGAGACAACAAAATTTCATCCTTGAGATCTTATAATTCTGGCAGTTTAGTTGATTTTTTCTCTGAACCAGTTCAACCTTCAGAACCACTTCAGAATAAAGCATTTGGCATTCCACGACCCCCTGGTCCTACAAGATCTGTTAGCATGGACCTATCCAAGGCACCATTGGAATCAGCAGCAGCGGCATCTCAAGCTCCAACAGTGGATCTGTTTCAATCATCTTTTTCATCTGCAATTCCATTTTTCAATGAGAATCAACTTACTCAAGCATCCCAACCTGCATCTATTGAATTTTTTGCGGATCTCTCTCAGAAGCCTTCTACTGTAAACTTAAATGAAAAGGCACTGGATTTAACTGTCCCTAAAAATGAAGGATGGGCAACTTTTGATATGCCTCAGAGCACCTCATCCACTGCACAAGTGGAAATTCCAGCTACTGTACCCTTAAGTACTGAATCTTTACAAGAAAGATTTGATCCCTTTTCCACCTCAAATGCAAACACACAATGGCCATCTTTTGATTTTTCTAGTCCATGGAATGCATTTGAAGGTTCTGGTGGCCATCATCCTGTGGATGCCCTTGGTCAAGGATTACAATTGCACAATTTTCCCTCAGCTGATAATCAAATTTTGGGATTAAGAGACTCTGAGGGGTCCAAAAGTAACGACGATAAAGGCATTGTCCCTGTTGATGGATTTGAAAATCATGACATCCCATCGCATGTCAGTGATTCAGCATATCCACCATCCATGCTTCCTTCAATGGGAGACATTGAACCTATTGGAATGAAATGTAAATCAACTAATCCATTTGATTTTCCTCATGAATCTGATGTAGCTCACAACAATATGTTTCTTGATATGAGCTCTTTGCAAGATGCACTGCCAGATGCCCTGTTTCCAACCTCCTTCCATAGTGGTATAGCTGAATCTTGGCTTCCCCAAAACACGGTGACCCCTTATATTTCCTCTTCTGGTGAAGGTGGTTTGTCATTCATGGCTGTGCAATCACCAGGTTCTCAAATACAGAACATCCAGACACCAGAACCAGTTGCTTCGTTTGGGGGAAACCCTTTTGCATAG 1965 0.4117 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQSGGNQRAREIYLKNWDFQRQRLPDNSNVNKIREFIKSVYVDGRYAAVKSSEKPPRDAQSPGIHEDDRRASSYHSYSQSPPYDYQYEDRKYGKQAAALTRKPGSDKARYEGKISSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVFSGGEQFKSDVHSPNFYKDIKISSPSYQRRSGSSSSEDVWSQARNASLETNVNAKIDGNGIRPPQITASEQSGDNKISSLRSYNSGSLVDFFSEPVQPSEPLQNKAFGIPRPPGPTRSVSMDLSKAPLESAAAASQAPTVDLFQSSFSSAIPFFNENQLTQASQPASIEFFADLSQKPSTVNLNEKALDLTVPKNEGWATFDMPQSTSSTAQVEIPATVPLSTESLQERFDPFSTSNANTQWPSFDFSSPWNAFEGSGGHHPVDALGQGLQLHNFPSADNQILGLRDSEGSKSNDDKGIVPVDGFENHDIPSHVSDSAYPPSMLPSMGDIEPIGMKCKSTNPFDFPHESDVAHNNMFLDMSSLQDALPDALFPTSFHSGIAESWLPQNTVTPYISSSGEGGLSFMAVQSPGSQIQNIQTPEPVASFGGNPFA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01026 654 MobiDBLite consensus disorder prediction 134 148 - -
Viun4g01026 654 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Viun4g01026 654 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Viun4g01026 654 MobiDBLite consensus disorder prediction 286 300 - -
Viun4g01026 654 MobiDBLite consensus disorder prediction 124 161 - -
Viun4g01026 654 MobiDBLite consensus disorder prediction 511 525 - -
Viun4g01026 654 MobiDBLite consensus disorder prediction 507 543 - -
Viun4g01026 654 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Viun4g01026 654 PANTHER ARFGAP/RECO-RELATED 1 654 IPR044820 GO:0005096
Viun4g01026 654 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Viun4g01026 654 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Viun4g01026 654 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Viun4g01026 654 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Viun4g01026 654 MobiDBLite consensus disorder prediction 276 300 - -
Viun4g01026 654 CDD ArfGap_AGFG 11 123 - -
Viun4g01026 654 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Viun4g01026 654 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01026 Viun-Chr4 10761387 10768802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01026 14 137 C2H2 Transcription Factor Family AT3G07940 32.090 6.63e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01026 K15044 - gmx:100794964 1021.54