Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01016 ATGGACAGGCTCATAAAGTTAGAGCCTTCAAACACAATCCTAATCAGAGTAGAACCAGGGCAAAAGTGCCATGGCAAAATCACCTTACACAACGTCATGCACACAATGCCAGTGGCCTTCAGGCTTCAACCCCTCATCAAAACCCGTTACGTAGTGAAGCCCTACTCAGGTATCATCTCCCCCTTAGCCACGCTCACCGTAGAAATCATCTATCATACACCCTCCACCACCACCACCACAATCCTCCACCACTCCAACGACTCCTTCCTCCTACACAGCGTCTTGGTCCCCGGAGCCGCCATCAGGGAACCCTCGTCCATGTTCGACGCCGTTCCCTCCGACTGGTTCAAGAAAAAACAAGTCTTCACCGACAGCGGCATAAGGGTCATGTTTTTAGGGTCACACATTCTGTCCCAGTTGGTCTCGCTCGGGGAAAACGATGAGGTGAGGGAAGCTCTGGAGAGAAGCGACCCTTCCTGGAGAATCGTCGACAGCACCGACCCACGTGGCCAGACGTTGCTCCACTTGGCGATCGCGCAGGGAAGACCTGACCTCGTTCAACTGCTTCTGGAGTTCGAGGCCGATACCGAGGCAACGAACCGTTCTGGGTTGACCCCACTTGAGGCTGCAGCGTCGTGCAACGAAACATTGATCGTGGAGCTTCTTCTGGCCCGCAGGGCCATAACGGAGCGAGCCGAAATGGCGGCGTTTGGGCCGATTCATCACGCGGCTGGAGGAGGACACGTGGAGGTCCTGAGACTGCTCTTGCTCAAAGGCGCCAAAGTGGACTCGCTCACGAAAGACGGCAACACTGCTTTGCACGTTGCAGTTGAGGAGCGTAGAAGAGACTGTGTTAGACTTCTTCTAGCCAACGGTGCCAGAACTGATCTTAAGAACGCAAGAGAAGGTGACACCCCTTTGCACATGGCAGCAGCAGCAGGAGACGAGAGCATGGTCAAGCTCCTGCTACAGAGGGGCAACAATGCCGACAAGGATGTCCGAAACGCGCAAGGAAAAACCGCCTACGACGTGGCGGTGGAGAACGGCCACGAGCGCCTCTACGACGCCCTGAGCCTGGGCGACAAGCTGTGCACGGCGGCGAAGAAAGGCGAAGTGAGAACCATCCAGAAGCTTCTGGAGAAGGGCGCGGACCTTAACGGGAGGGACCAGCATGGTTGGAGCGCGCTGCACCGAGCGTCGTTCAAAGGGCGAATCGACGTGGTGAAGGTTCTGGTGGAGAGTGGGGTGGAGGTGGACGCGAAGGACGAGGAAGGGTACACGGCACTGCACTGTGCGGCGGAGGCGGGGCACGCAGACGTGACGGAGTTTTTGGTGAAGAAAGGTGCGGACGTTGAGGCGAGGACTAGGAAGGGTGTGAGCGCGTTGCAGATAACAGAGTCGTTGAACTACGTTGGGATCACGAGGGTTCTTGTTAACGGTGGGGCTAGTAGGGAAAATTCTGATAGAGTCGCTGCGTTTAAGAGTAGTAAGATAATGGAAGGTGGGGGTGTTGTGAAGAAGAGGAGGGGTTTGAATAATGGTGCTGCTTTTGGTCGTTCATTGGCTCTGGCTGTGCTATAA 1581 0.5579 MDRLIKLEPSNTILIRVEPGQKCHGKITLHNVMHTMPVAFRLQPLIKTRYVVKPYSGIISPLATLTVEIIYHTPSTTTTTILHHSNDSFLLHSVLVPGAAIREPSSMFDAVPSDWFKKKQVFTDSGIRVMFLGSHILSQLVSLGENDEVREALERSDPSWRIVDSTDPRGQTLLHLAIAQGRPDLVQLLLEFEADTEATNRSGLTPLEAAASCNETLIVELLLARRAITERAEMAAFGPIHHAAGGGHVEVLRLLLLKGAKVDSLTKDGNTALHVAVEERRRDCVRLLLANGARTDLKNAREGDTPLHMAAAAGDESMVKLLLQRGNNADKDVRNAQGKTAYDVAVENGHERLYDALSLGDKLCTAAKKGEVRTIQKLLEKGADLNGRDQHGWSALHRASFKGRIDVVKVLVESGVEVDAKDEEGYTALHCAAEAGHADVTEFLVKKGADVEARTRKGVSALQITESLNYVGITRVLVNGGASRENSDRVAAFKSSKIMEGGGVVKKRRGLNNGAAFGRSLALAVL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01016 526 Gene3D - 234 306 IPR036770 -
Viun4g01016 526 ProSiteProfiles Ankyrin repeat profile. 235 267 IPR002110 GO:0005515
Viun4g01016 526 Pfam Ankyrin repeats (3 copies) 364 454 IPR002110 GO:0005515
Viun4g01016 526 Pfam Ankyrin repeats (3 copies) 219 298 IPR002110 GO:0005515
Viun4g01016 526 PRINTS Ankyrin repeat signature 440 454 IPR002110 GO:0005515
Viun4g01016 526 PRINTS Ankyrin repeat signature 303 318 IPR002110 GO:0005515
Viun4g01016 526 ProSiteProfiles Ankyrin repeat region circular profile. 268 299 - -
Viun4g01016 526 Gene3D - 129 233 IPR036770 -
Viun4g01016 526 Gene3D Immunoglobulins 1 128 IPR013783 -
Viun4g01016 526 Gene3D - 358 492 IPR036770 -
Viun4g01016 526 ProSiteProfiles Ankyrin repeat profile. 268 300 IPR002110 GO:0005515
Viun4g01016 526 ProSiteProfiles Ankyrin repeat profile. 424 456 IPR002110 GO:0005515
Viun4g01016 526 ProSiteProfiles Ankyrin repeat profile. 302 334 IPR002110 GO:0005515
Viun4g01016 526 ProSiteProfiles Ankyrin repeat region circular profile. 169 201 - -
Viun4g01016 526 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 132 IPR000535 -
Viun4g01016 526 SUPERFAMILY Ankyrin repeat 164 487 IPR036770 -
Viun4g01016 526 ProSiteProfiles Ankyrin repeat region circular profile. 235 263 - -
Viun4g01016 526 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Viun4g01016 526 Pfam Ankyrin repeats (many copies) 300 345 IPR002110 GO:0005515
Viun4g01016 526 Pfam Ankyrin repeats (many copies) 163 208 IPR002110 GO:0005515
Viun4g01016 526 Pfam MSP (Major sperm protein) domain 5 107 IPR000535 -
Viun4g01016 526 ProSiteProfiles Ankyrin repeat region circular profile. 391 423 - -
Viun4g01016 526 SMART ANK_2a 337 387 IPR002110 GO:0005515
Viun4g01016 526 SMART ANK_2a 302 331 IPR002110 GO:0005515
Viun4g01016 526 SMART ANK_2a 424 453 IPR002110 GO:0005515
Viun4g01016 526 SMART ANK_2a 457 486 IPR002110 GO:0005515
Viun4g01016 526 SMART ANK_2a 268 297 IPR002110 GO:0005515
Viun4g01016 526 SMART ANK_2a 202 231 IPR002110 GO:0005515
Viun4g01016 526 SMART ANK_2a 391 420 IPR002110 GO:0005515
Viun4g01016 526 SMART ANK_2a 169 198 IPR002110 GO:0005515
Viun4g01016 526 SMART ANK_2a 235 264 IPR002110 GO:0005515
Viun4g01016 526 ProSiteProfiles Ankyrin repeat region circular profile. 424 456 - -
Viun4g01016 526 Gene3D - 307 357 IPR036770 -
Viun4g01016 526 ProSiteProfiles Ankyrin repeat profile. 169 201 IPR002110 GO:0005515
Viun4g01016 526 ProSiteProfiles Ankyrin repeat region circular profile. 302 330 - -
Viun4g01016 526 SUPERFAMILY PapD-like 2 141 IPR008962 -
Viun4g01016 526 ProSiteProfiles Ankyrin repeat profile. 363 390 IPR002110 GO:0005515
Viun4g01016 526 PANTHER MOLTING PROTEIN MLT-4 142 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01016 Viun-Chr4 10671357 10673013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01016 293 488 Ion Channels AT4G32500 29.648 9.00e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01016 - - gmx:100782444 797.349