Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00938 ATGCAATGTCTTATTGCATTAGCGACAGGAACAGTGACAAAACTTGGAGAATCCTTAGTTGCACCAATTGGAAATCAATTTGGATATCTAGTTCACTATAAGAAAAATATAAAAGATCTTAAAAGAGAACTCAAAACATTGGAAGGTAGAAAACAAGGAGTACAAGGTGTGGTTGATGAAGATAGAAGAAATGGACGTCAAATTGTATCAATTGTACAAGATTGGCTCTACAAAGTGGAAAGAATCATAGATGAAATAGAAAAAATTAATGATTTCCAAGTAGAAAACAATAAATGTCTTCATATATGGTCTCCAAATTTGGTGTCAAGGTATTCATTAAGCAAGAAAGCAAAAATATTGATAATGAGTGTTACAAGATTAAATGAAGAGAAATTTGACATTATATCATACTCTCTACCAACACCAAGACTTGGATCCACCTTCTCAAATGTTATCAAAAGTTTTCCAAGCAGAAAATCAATTATTATAGAGGTTTTGGAGAAATTGAAGGATGAAGAATTTAAAATAATAGGTATTTGTGGAATGGGTGGTGTGGGAAAGACAACACTTGTTAAAGAAGTAATCAAAACATTAGATGTATGCAAGTTATTTGATGAAGTTGTAATGGTAGTGGTTTCCCAAAATCTTGATTATGTGAAAATTCAAGGTCAAATTGCTGATGCTTTAGGCTTGAGATTTGACAAGGAGACGATTCAAGGAAGAGCATGTCAACTACATGAAAGATTGAAAGGTGTTAATAATATCTTAATAGTTCTTGATGATGTTTGGATAGACTTTGATTTTGAGTCTATTGGGATTCCTTCCAATGAACATCATAAGAATTGTAAAATTTTGTTTACATCAAGAAATGAAGATGTTTGTTATAAGATGGGAAGCCAAAAGAATTTCACAATTTCTATTTTGTCTCCAGAAGAAAGTTGGGACCTTTTTCATGATATGCTTGGTAGAAATCTTTCAACCAAGCTTGATATTCTTGACATAGCAAAAGAGGTTTCAAATGAATGTGGGGGGTTGCCAATTGCTATTGTTACAATGGCAAAAGCATTAGCAAATAAAGAAAAATATACTTGGGAAGATGCACTACATCAATTAAAAAGATCTTCCATCACTTCCCTTTTAGAAATGCAAGCTTGTGTATATTCAAGTATCAAGCTGAGTTATGATTTTTTAGATAGTGCAGAAGAAAAAAAAGTTATTTTTCTTTGTTGCTTATTTCCAGAAGACTTTGACATTCCTATTGAAGTTCTACTCAGGAAGGGAATGGGTTTGAGATTGTTTAAAGGCATTGATGCATTATGGAAAGTTAGAAATAGAGTGCATACCATTGTTGATAAACTTAAAAGATGTTTCATGTTGTTAGATGGTAATGTGGAAGAATGTGTCAAAATGCATGATGTTGTACGTGATGTCATCATATCAGTTGCATCTACAAAGGAATTTGGTTTTATGGTTGAATGTGATGGATATCAAATGGAACAACCTAAAGAAGAAACATGTTGTCATAGTACTGCAATTTCACTTATCTCTAAAGAAGCAAAAGAACATCCTAAAGTGTTAAATCCAAAGCTCAAGCTTTTGCAAATAGCATCAAAGAAAAAAGATTTGGTTCCAGATAATTTCTTCCAATGTGCGAATAAGCTTATGGTGCTTAGTCTACAAAATGTGCACATTCATTCAATGTCTTCTGTATTTCAAGCTTTAGGTAATATTCACACTCTATTACTAGAAGATTGTCATGTAAGAGACGTATCTATAATTGGTAAGCAACTCAAAAGGCTTGAGATTCTTAGTTTTTCTAACTCAAATATCAAAGAATTGCCAGAAGAAATTGGACAACTAAGCTCGTTAAGGTTATTAGATTTGACAGAATGTAATGATCTCATTCAAATATCTGCTAATGTCTTGGCAAGCTTATCTAGATTAGAAGAGCTCTATCTTAGAGTGAGAAGTCTTTCTTCTAAGGAAACTAATCACATTCTTTTTGAGTTACAATCTTTATCTCATCATCTCAAGGTCATAGAGATTGTAATTTGGACAAATGAAGATTTACCCAAAGATTTGTTCTTCAAAAATATTGAGAGATTTTGGGTCTATTTGGGAGATTCATCTTCTCTTTTTCATGGCATTGTTCGAAAAGGATACCTGCAACCAAATATTTTGAAGCTAAATAATGCATATTACAAATATATCAAGATGAGTGTGACAATTCAACAATTACTTGAAAAGGTTGAAATTCTCAATTTGGTTGATATAAAAAACATGAAAGATGTTATCTCTGAATTAAATGAGAGGGGTTTTCCATTTTTGAAACATCTAAGTATTGAGTTTTGCAACAACATTGAATATGTTGTGAATGCATTTGAGGGTTGTATCTTTCCTCAACTTCTATCATTTTCTTTAAGTAATTTGGATAATTTAAAAGATATATTCAATGTCTCTGGTTCCATGAGTCAAACAAATGACTTTGCAAAGGTTAAACCCATCACTTCATCTCAATGCTTTGGAATCCTTAGACAACTTAAAATAGAATATTGTAACAAGTTGAAGACGGTCTTCACATTGTTTCCAAGAACAATTAATTTGGCTACACTTCAATGTTTGCATGTGGTTGAAAGCTATGGAATTGAATGCATCATTTCAAGCAATAGTAAGTATGACGGGAAGTCAATAATAACGTTTTCAAATTTGGTAGAACTGAAGTTGCAAGAACTGCCAAACTTGATGGGAATGTTTAAAACCAATGTTATTCATGAGCATTGTTCCTCAACAATCCAAATTCATGAATCGAATGATCAATTAATTGATCAAATTAAGCCAATTGCTACTCTTTTCAAATCTAGCTGTATGCAATTGTTCCCAAAGTTGGAAAAACTCTTCTTACAAGCATGTTCTTCGCTAGAAATGGTGTTTGATCTTCAAAAATCACAGTTTCATGGTGAATCAATGGTTTTCTTATTTCCACAGTTGAAAGAAATAGAGATATCTTGGCTTAGTAAGTTAAGACACATTTGGGGTAATGTTCCAAGCTACATTCAAGGGTTTCAGAATGTGAAATCAATCAAAGTGAAGAAATGTGATTCCTTAGGGTTTCTTCTAACTCCCAACATTGCAAGGGCACTTACTCAGCTTCAAAAAATGGTGATCCATAGCTGCCATTCCATGGAGAAAATTGTTGGAAAAGAAGAAAACCTAAATGGTGATGATGAAGAAAAGAATGTGGAAACCCTTGTGTTTGGTCAATTAGAATCTTTAACACTTATTGATCTTCCAAACCTTACGAGTATTTGTTCAGATTCCTATGAAGTAATGATGCCATCTTTGAGATTTTTATGCATTGATGCATGCCCTCAGCTTGTGACATCTTCCATGTTTACTCAAACTGTGTCAAGCCAAGAGAATTTCAATGCCTCAACAACATGTGATGTTGCAAATGGTACTTTTGAAGAGGATTCACCAAGGTTTCTTCAGTGTTGCCTTAAATGCACCCCACATGTATTTTCCAACTTGAAGCTTAAGGCTTCATCAACAAAGAAAGATGTCTCTTCTGTCAGCAATATATATTCCAAATCAGAAACAGTTTCCCACATTCCAATTTTGGAGCAAATGCAAGTAAAAGGATGGGATTCTCTAGAAATCTTGTTCCTTCTCAAACAAAACCAACTTTCTGATGACACTGATACCAATTGTGTAGTGAAGTTGATACTTGCACAAACACTTAAAAATCCTGTAGAAATCACTGCATTCAATAACCTCACTGTGTTAACCATAGATTCTTGTCACAAGTTGAAACATCTATTCTCATATTCCATAGCAAAGCTCCTTGTGAAATTGCAAGAAATAAAAATGTCAAACTGTAAGGTGATAAAGCAACTAGTTCAAAGAGAAGGAGAAGATAATTTAACTCTATTTCTTCCTCAATCAAGTTGTGTCAAAGTACATGAAAACTCTTCATCTAGTGACCATGTTACCTCTTCCCAAGAAGCATGTGGCTTAGAGTGGTTATCTTTGAAGAGAATCAGCATATCTCACTGTGGGGTGCTAGAAGTTGTTATTGGTGAAATTAGGGAGAAAGTGGATACCATAATTGCTTCATTTGCTCAATTGCAATCTCTTACATTGAGCCATCTACCAAATGCTGCAAGCTTTTGTCTCACACATTGTGCATCAGAATCACCACACTTTGAGAACATCCATGGTAGTGGCTATCAAAATCATGAGGTAACAAGTAATGAAGAAATCAGAAATGTTGATCCATTTATAAATGGCTTCATTTTTCCTAATCTAACATATCTGGCAATAACTAGCTGCAACAAAGTTAGAAGTTTGTTCTCTCCTTCAACATCAACTAGCTTTGTGCGTTTGGTAGAACTAGATATATCTGGTTGTAGGGAGATAGAGGAAATAGTGTCTGCAGAAGAAACACAAGGGAATGTGATTAAGATTGTGTTCCACAGCTTGCAACGTCTGAAACTTGAAAACCTACCAAAACTCAAGGCCTTCTGCCAGGGTTCCTATGGCTTTGATTTTCCATCATTGCATCAAGTATTCTTGAAAAATTGCCACATGATGGAGACATTCTCTCATGATCCTTCATACACTCCAAAGTTGGAAACAGTCATCATGGAAATTGGAAGCATAACCAAGAACATGTGGATGGGAGATCTGAATGCTACTGTACCACTTTCCAAAGGACTTTTGGCTTTTCAAACATCAGAAACACTTGGATGGATCCAGCAGGATAAATGCATGCAAAGATACTTCACCCACGAAAAACACTTGACAGTTGAAGGTTTTGAAAGGCTGCTAAAACTAGTTCCCTCCAACGTAATACACATATTTCAAAATCTAAAGGAACTCACAATAAAAAATTGTGGTTCACTAGTTGAGGTCTTTGAATCACATGGTGTGGATGCAAAGCAAATGCATGCCATGATACATTACAAGATAGAAGCATTGAATTTGTATTTTCTACCAAAACTGATCAACCTATGGAAAAATTATGGTGGAGTTCTGGGATTCCAGAAGCTAAGAATACTAAAAGTGCAACACTGTGGCAACTTGTGTAATTTGTTCTCTCCATCAATAGCCAGAAGTCTAGTACAACTTAGGCACCTACGAGTTCATAGTTGCCACATGATGGAGGAAATAACTACTAAGGAAGATGAGGAATCAGAAGGACCAAATAATGCTAAGATTGTATTTCCACTTTTGAACAAGCTGGAGCTTCGTTATATTCCCAACCTCAAATGTTTCTGCTCAGGAACTTTCAATATTGATCTTCCATCTTGTGAAGAAATGATAATTGAAAAATGTCCCATGATGACTACCTTCTGCTATGGATCAGTAACCACAGCAAAGCTTCCCCATATATATAAAGGTTCATATGAGTATGTTGACATAATGGGAGACCTCAATATGACCATCTATCATGCTAATGAGAGTTTGAAGGTTGCACAACAAACATCAGAGACAATCACATGCATTGAGCATGGTCAAAAGCTGCTGCCTTACTTAAGAAGTGATACAGAATTGGTTGTTCAAGGTAGTGAAAAACTGTTGCATTGTATTCCATCCAGCATGCTGCATAGGTTCCAGCATCTAAAACAACTCAAGGTGCATGATTGTGGTTCACTGATTGAGATATTTGAATCAGAGAAAGTGGGTGAAAATGAAGATGAAGGGGGTACCACAACACCATACACTTTTGATCTGCAGGAACTGCATCTGTATGATCTTCCTAAACTGATGCACATATGGAAATATCATGGTGGAATCTTGAGCTTTATGAACCTTAAAAAGCTAAAGATTCAGCACTGTAATAGTTTGAAAAATGTGCTTTCTCCTTCCATGGCCAGAAGCCTTTCACAACTCCAAGAGCTTTCAGTACATGAATGTGAGTTGATAGAAGAGATCATCACTAGAGATGAGAAGCTATCAGAAGAACCAAACAAGGTTAAGATTATATTCCCGGCATTGCAATGGTTAACCCTTTACCGGCTTCCAAGCCTTAGATGTTTCTGCTCAAACACTTACCATTTTGAGCTGCCATCCTGCATTGACATAACCATTACAGAATGTCCTAAGATGGAGGTTTGCCATGGAAACAGACACCTCAGAAATTCCTTTTGTCTCCATTAA 6159 0.351 MQCLIALATGTVTKLGESLVAPIGNQFGYLVHYKKNIKDLKRELKTLEGRKQGVQGVVDEDRRNGRQIVSIVQDWLYKVERIIDEIEKINDFQVENNKCLHIWSPNLVSRYSLSKKAKILIMSVTRLNEEKFDIISYSLPTPRLGSTFSNVIKSFPSRKSIIIEVLEKLKDEEFKIIGICGMGGVGKTTLVKEVIKTLDVCKLFDEVVMVVVSQNLDYVKIQGQIADALGLRFDKETIQGRACQLHERLKGVNNILIVLDDVWIDFDFESIGIPSNEHHKNCKILFTSRNEDVCYKMGSQKNFTISILSPEESWDLFHDMLGRNLSTKLDILDIAKEVSNECGGLPIAIVTMAKALANKEKYTWEDALHQLKRSSITSLLEMQACVYSSIKLSYDFLDSAEEKKVIFLCCLFPEDFDIPIEVLLRKGMGLRLFKGIDALWKVRNRVHTIVDKLKRCFMLLDGNVEECVKMHDVVRDVIISVASTKEFGFMVECDGYQMEQPKEETCCHSTAISLISKEAKEHPKVLNPKLKLLQIASKKKDLVPDNFFQCANKLMVLSLQNVHIHSMSSVFQALGNIHTLLLEDCHVRDVSIIGKQLKRLEILSFSNSNIKELPEEIGQLSSLRLLDLTECNDLIQISANVLASLSRLEELYLRVRSLSSKETNHILFELQSLSHHLKVIEIVIWTNEDLPKDLFFKNIERFWVYLGDSSSLFHGIVRKGYLQPNILKLNNAYYKYIKMSVTIQQLLEKVEILNLVDIKNMKDVISELNERGFPFLKHLSIEFCNNIEYVVNAFEGCIFPQLLSFSLSNLDNLKDIFNVSGSMSQTNDFAKVKPITSSQCFGILRQLKIEYCNKLKTVFTLFPRTINLATLQCLHVVESYGIECIISSNSKYDGKSIITFSNLVELKLQELPNLMGMFKTNVIHEHCSSTIQIHESNDQLIDQIKPIATLFKSSCMQLFPKLEKLFLQACSSLEMVFDLQKSQFHGESMVFLFPQLKEIEISWLSKLRHIWGNVPSYIQGFQNVKSIKVKKCDSLGFLLTPNIARALTQLQKMVIHSCHSMEKIVGKEENLNGDDEEKNVETLVFGQLESLTLIDLPNLTSICSDSYEVMMPSLRFLCIDACPQLVTSSMFTQTVSSQENFNASTTCDVANGTFEEDSPRFLQCCLKCTPHVFSNLKLKASSTKKDVSSVSNIYSKSETVSHIPILEQMQVKGWDSLEILFLLKQNQLSDDTDTNCVVKLILAQTLKNPVEITAFNNLTVLTIDSCHKLKHLFSYSIAKLLVKLQEIKMSNCKVIKQLVQREGEDNLTLFLPQSSCVKVHENSSSSDHVTSSQEACGLEWLSLKRISISHCGVLEVVIGEIREKVDTIIASFAQLQSLTLSHLPNAASFCLTHCASESPHFENIHGSGYQNHEVTSNEEIRNVDPFINGFIFPNLTYLAITSCNKVRSLFSPSTSTSFVRLVELDISGCREIEEIVSAEETQGNVIKIVFHSLQRLKLENLPKLKAFCQGSYGFDFPSLHQVFLKNCHMMETFSHDPSYTPKLETVIMEIGSITKNMWMGDLNATVPLSKGLLAFQTSETLGWIQQDKCMQRYFTHEKHLTVEGFERLLKLVPSNVIHIFQNLKELTIKNCGSLVEVFESHGVDAKQMHAMIHYKIEALNLYFLPKLINLWKNYGGVLGFQKLRILKVQHCGNLCNLFSPSIARSLVQLRHLRVHSCHMMEEITTKEDEESEGPNNAKIVFPLLNKLELRYIPNLKCFCSGTFNIDLPSCEEMIIEKCPMMTTFCYGSVTTAKLPHIYKGSYEYVDIMGDLNMTIYHANESLKVAQQTSETITCIEHGQKLLPYLRSDTELVVQGSEKLLHCIPSSMLHRFQHLKQLKVHDCGSLIEIFESEKVGENEDEGGTTTPYTFDLQELHLYDLPKLMHIWKYHGGILSFMNLKKLKIQHCNSLKNVLSPSMARSLSQLQELSVHECELIEEIITRDEKLSEEPNKVKIIFPALQWLTLYRLPSLRCFCSNTYHFELPSCIDITITECPKMEVCHGNRHLRNSFCLH 2052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00938 2052 SUPERFAMILY L domain-like 899 1545 - -
Viun4g00938 2052 Gene3D Ribonuclease Inhibitor 954 1147 IPR032675 -
Viun4g00938 2052 Gene3D Ribonuclease Inhibitor 1591 1796 IPR032675 -
Viun4g00938 2052 Gene3D Ribonuclease Inhibitor 1842 2047 IPR032675 -
Viun4g00938 2052 FunFam Probable disease resistance protein At1g61300 149 302 - -
Viun4g00938 2052 Gene3D - 145 306 IPR027417 -
Viun4g00938 2052 Pfam NB-ARC domain 163 395 IPR002182 GO:0043531
Viun4g00938 2052 Gene3D - 307 398 IPR042197 -
Viun4g00938 2052 Gene3D Ribonuclease Inhibitor 1247 1558 IPR032675 -
Viun4g00938 2052 SUPERFAMILY RNI-like 1428 1787 - -
Viun4g00938 2052 Coils Coil 30 57 - -
Viun4g00938 2052 PRINTS Disease resistance protein signature 176 191 - -
Viun4g00938 2052 PRINTS Disease resistance protein signature 618 634 - -
Viun4g00938 2052 PRINTS Disease resistance protein signature 342 356 - -
Viun4g00938 2052 PRINTS Disease resistance protein signature 249 263 - -
Viun4g00938 2052 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 931 1129 - -
Viun4g00938 2052 SUPERFAMILY L domain-like 468 818 - -
Viun4g00938 2052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 410 IPR027417 -
Viun4g00938 2052 SUPERFAMILY L domain-like 1845 2036 - -
Viun4g00938 2052 Gene3D Ribonuclease Inhibitor 500 921 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00938 Viun-Chr4 8617395 8632354 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00938 173 477 WRKY Transcription Factor Family AT5G45050 26.019 1.31e-06 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00938 - - vra:106757704 3618.17