Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00916 ATGTTGGACTACGAATGGGGAAACCCGTCTTCAATAATGCTAACCGGAAACGAGGAGACCGCCGCCGGGGCTTCCGACCAGACGCACCGTCAAATCTTCGACCACTACGCGTCGCACTCGCTCATCCCCGACCACTTTCTGCACGCGCCAACTCACTCCGCCGTCACCACCGCCGCGGCCGCCACCGTCGAGTTCACCAACCACCACCACCACTTCAACCCGCAGTCGCACCACCACCAAGTCAACAACCACCACCACCACCACCCGTTCTTCGACCCACGCGCCTTCCACGGCACGTCCTCCGCCTCCTACCCCCCACCCCCTTCCATGCTCTCGCTTGACCCGCTGCCCCACGTCAACGCCGCCAACTGCGGCCCTGGGCCCGGCCCCGGCCCGGGCGGACTCCTCCTCGTTCCCAAGTCCGAGGACGTGGGCCGGCCCATGGACTTTGTCGGCTCACGAATTGGCCTGAATCTCGGTGGCCGGACGTATTTCTCCTCCTCCGAGGACGATTTCGTGAGCCGTCTCTACCGTCGGTCCCGGCCGGCGGAATCCGGTTCGGCGGCTTCCTCCAACTCCCCGCGCTGCCAGGCCGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTGTGGTGGTGGCGCTTGTCTCTTCCCTCACCGTCGGAAAATTAA 771 0.642 MLDYEWGNPSSIMLTGNEETAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSAVTTAAAATVEFTNHHHHFNPQSHHHQVNNHHHHHPFFDPRAFHGTSSASYPPPPSMLSLDPLPHVNAANCGPGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAESGSAASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRLWWWRLSLPSPSEN 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00916 256 SUPERFAMILY SBT domain 194 245 IPR036893 GO:0003677|GO:0005634
Viun4g00916 256 ProSiteProfiles Zinc finger SBP-type profile. 193 256 IPR004333 GO:0003677
Viun4g00916 256 Gene3D - 186 245 IPR036893 GO:0003677|GO:0005634
Viun4g00916 256 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 178 242 IPR044817 GO:0003677
Viun4g00916 256 Pfam SBP domain 196 243 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00916 Viun-Chr4 8167347 8168898 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00916 1 243 SBP-box Gene Family AT1G02065 43.462 4.19e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun4g00916 SBP 3.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00916 - - vun:114181599 452.595