Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00905 ATGGGACAGGTTCCCAGAAGCAACTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCATGAGGTTGATAAACAGATCGATAAGCTGGCGGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCACCTGCCATGAAAGGTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCTCATGGTGTCAAAACAAAGATAGAGGCTATAAACAGAGATAACCTATCCAACAGACAAAATCCTGGCTGTGAGAAGGGAACAGGTATTGATAGAGCAAGAATGAATATGACAAATGCCTTGGCTAAAAAGTTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTCGTGGAGAGGAGAGTGATAACAGTTACTGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGAGGACAGGTAGTAAACACAGTAGAAGAAATCCAAGAGAGACATAATGCTGTGAAAGAGATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTCTAGATAACATTGAAAGTCAGATCACGCAGTCTGCATCTGGAAAAGAGCAATCTGAGAGACACAAGAGCTTCAGAAGATTCTGCAATAACCCAAGGACAGATCCAAGAATGATTGATGATTGA 783 0.4036 MGQVPRSNSDMGMEAFNKQIHEVDKQIDKLAVLLQKLKEANEESKAVTKAPAMKGIKKRMEKDIDEVGKIAHGVKTKIEAINRDNLSNRQNPGCEKGTGIDRARMNMTNALAKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHNAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQITQSASGKEQSERHKSFRRFCNNPRTDPRMIDD 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00905 260 Pfam Syntaxin 16 218 IPR006011 GO:0016020
Viun4g00905 260 Coils Coil 20 50 - -
Viun4g00905 260 CDD SNARE_syntaxin1-like 182 241 - -
Viun4g00905 260 MobiDBLite consensus disorder prediction 235 260 - -
Viun4g00905 260 Gene3D - 9 214 - -
Viun4g00905 260 SMART tSNARE_6 178 244 IPR000727 -
Viun4g00905 260 SUPERFAMILY t-snare proteins 10 232 IPR010989 GO:0016020|GO:0016192
Viun4g00905 260 PANTHER SYNTAXIN 12 233 IPR045242 -
Viun4g00905 260 CDD SynN 13 170 IPR006011 GO:0016020
Viun4g00905 260 MobiDBLite consensus disorder prediction 230 260 - -
Viun4g00905 260 SMART SynN_4 8 134 IPR006011 GO:0016020
Viun4g00905 260 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 183 231 IPR000727 -
Viun4g00905 260 FunFam Syntaxin 132 8 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00905 Viun-Chr4 8030412 8034288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00905 2 231 SNARE and Associated Proteins AT3G03800 62.609 8.89e-104 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00905 K08486 - gmx:100800991 422.165