Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00904 ATGGGACAGGTTCCCAGAAGCAACTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCATGAGGTTGATAAACAGATCGATAAGCTGGCGGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCACCTGCCATGAAAGGTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCTCATGGTGTCAAAACAAAGATAGAGGCTATAAACAGAGATAACCTATCCAACAGACAAAATCCTGGCTGTGAGAAGGGAACAGGTATTGATAGAGCAAGAATGAATATGACAAATGCCTTGGCTAAAAAGTTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTCGTGGAGAGGAGAGTGATAACAGTTACTGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGAGGACAGGTAGTAAACACAGTAGAAGAAATCCAAGAGAGACATAATGCTGTGAAAGAGATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTCTAGATAACATTGAAAGTCAGGTTTGTTCACTCTGTGCCTCTCACACCCTTAATCTTGTGTTTGCATGCATGTGTATGTGGAACACAGGGCATATATAG 759 0.4045 MGQVPRSNSDMGMEAFNKQIHEVDKQIDKLAVLLQKLKEANEESKAVTKAPAMKGIKKRMEKDIDEVGKIAHGVKTKIEAINRDNLSNRQNPGCEKGTGIDRARMNMTNALAKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHNAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVCSLCASHTLNLVFACMCMWNTGHI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00904 252 PANTHER SYNTAXIN 12 230 IPR045242 -
Viun4g00904 252 SUPERFAMILY t-snare proteins 10 231 IPR010989 GO:0016020|GO:0016192
Viun4g00904 252 CDD SynN 13 170 IPR006011 GO:0016020
Viun4g00904 252 Gene3D - 9 214 - -
Viun4g00904 252 Pfam Syntaxin 16 218 IPR006011 GO:0016020
Viun4g00904 252 CDD SNARE_syntaxin1-like 182 228 - -
Viun4g00904 252 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 183 228 IPR000727 -
Viun4g00904 252 Coils Coil 20 50 - -
Viun4g00904 252 SMART SynN_4 8 134 IPR006011 GO:0016020
Viun4g00904 252 FunFam Syntaxin 132 8 137 - -
Viun4g00904 252 SMART tSNARE_6 178 240 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00904 Viun-Chr4 8029889 8034287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00904 2 230 SNARE and Associated Proteins AT3G03800 63.755 1.22e-104 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00904 K08486 - gmx:100800991 422.165