Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00903 ATGGGACAGGTTCCCAGAAGCAACTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCATGAGGTTGATAAACAGATCGATAAGCTGGCGGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCACCTGCCATGAAAGGTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCTCATGGTGTCAAAACAAAGATAGAGGCTATAAACAGAGATAACCTATCCAACAGACAAAATCCTGGCTGTGAGAAGGGAACAGGTATTGATAGAGCAAGAATGAATATGACAAATGCCTTGGCTAAAAAGTTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTCGTGGAGAGGAGAGTGATAACAGTTACTGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGAGGACAGGTAGTAAACACAGTAGAAGAAATCCAAGAGAGACATAATGCTGTGAAAGAGATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTCTAGATAACATTGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAATGCTAAGAAACTGCAGAAGAACTCACGAAAATGGATGTGCATTGCCATAGTTATACTGTTGATAATAGTAGCTATCATAGTTGTGGGTGTTCTCAAACCTTGGAAGAGTAGCTAG 846 0.4043 MGQVPRSNSDMGMEAFNKQIHEVDKQIDKLAVLLQKLKEANEESKAVTKAPAMKGIKKRMEKDIDEVGKIAHGVKTKIEAINRDNLSNRQNPGCEKGTGIDRARMNMTNALAKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHNAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQNAKKLQKNSRKWMCIAIVILLIIVAIIVVGVLKPWKSS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00903 281 PANTHER SYNTAXIN 12 265 IPR045242 -
Viun4g00903 281 FunFam Syntaxin 132 8 137 - -
Viun4g00903 281 Coils Coil 20 50 - -
Viun4g00903 281 CDD SNARE_syntaxin1-like 182 243 - -
Viun4g00903 281 Pfam Syntaxin 16 218 IPR006011 GO:0016020
Viun4g00903 281 SUPERFAMILY t-snare proteins 10 238 IPR010989 GO:0016020|GO:0016192
Viun4g00903 281 CDD SynN 13 170 IPR006011 GO:0016020
Viun4g00903 281 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 183 245 IPR000727 -
Viun4g00903 281 SMART tSNARE_6 178 245 IPR000727 -
Viun4g00903 281 Pfam SNARE domain 219 271 IPR000727 -
Viun4g00903 281 SMART SynN_4 8 134 IPR006011 GO:0016020
Viun4g00903 281 Gene3D - 176 276 - -
Viun4g00903 281 FunFam Syntaxin 132 176 276 - -
Viun4g00903 281 Gene3D - 13 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00903 Viun-Chr4 8029431 8034275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00903 2 278 SNARE and Associated Proteins AT3G03800 64.260 5.88e-123 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00903 K08486 - gmx:100800991 508.064