Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00901 ATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCTCATGGTGTCAAAACAAAGATAGAGGCTATAAACAGAGATAACCTATCCAACAGACAAAATCCTGGCTGTGAGAAGGGAACAGGTATTGATAGAGCAAGAATGAATATGACAAATGCCTTGGCTAAAAAGTTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTCGTGGAGAGGAGAGTGATAACAGTTACTGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGAGGACAGGTAGTAAACACAGTAGAAGAAATCCAAGAGAGACATAATGCTGTGAAAGAGATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTCTAGATAACATTGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAATGCTAAGAAACTGCAGAAGAACTCACGAAAATGGATGTGCATTGCCATAGTTATACTGTTGATAATAGTAGCTATCATAGTTGTGGGTGTTCTCAAACCTTGGAAGAGTAGCTAG 669 0.3991 MEKDIDEVGKIAHGVKTKIEAINRDNLSNRQNPGCEKGTGIDRARMNMTNALAKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHNAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQNAKKLQKNSRKWMCIAIVILLIIVAIIVVGVLKPWKSS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00901 222 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 124 186 IPR000727 -
Viun4g00901 222 CDD SNARE_syntaxin1-like 123 184 - -
Viun4g00901 222 Gene3D - 1 82 - -
Viun4g00901 222 SUPERFAMILY t-snare proteins 2 179 IPR010989 GO:0016020|GO:0016192
Viun4g00901 222 FunFam Syntaxin 132 117 217 - -
Viun4g00901 222 Gene3D - 117 217 - -
Viun4g00901 222 CDD SynN 1 111 IPR006011 GO:0016020
Viun4g00901 222 PANTHER SYNTAXIN 1 206 IPR045242 -
Viun4g00901 222 SMART tSNARE_6 119 186 IPR000727 -
Viun4g00901 222 Pfam SNARE domain 160 212 IPR000727 -
Viun4g00901 222 Pfam Syntaxin 1 159 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00901 Viun-Chr4 8029412 8032639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00901 1 219 SNARE and Associated Proteins AT3G03800 67.580 2.84e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00901 K08486 - gmx:100800991 403.675