Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00892 ATGTTGAAGGAAGGCACCAACAACGTTGGTGTTGGTGGCAGCTCCAGCACCTGGTCACGCGTCTGCGACACGTGCCGGTCAGCTCCATGCATAGTCTACTGCCATGCAGACTCAGCATACCTGTGTTCCTCCTGTGATGCTCGTGTCCATGCAGCCAACCGTGTGGCCTCAAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTTTGCAAAGCTGACGCAGCTTCTCTTTGTTCTTCGTGTGATGCTGACATTCACTCAGCGAACCCTCTCGCCAGCCGCCACCACCGTGTTCCAATTCTCCCCATTTCGGGTTCCCTCTTGGTAGAACCAGATCACGAACCGGAGCACGGTTTCGTGAACGAGGTGGAAGAGGAAGAGGAAGAAGTTTTCGATGAGTACGATGATGAGATTGAAGCTGCTTCGTGGTTGTTACCACATCCTTTGAAGGGTAACGAGGAGGAGGAGAATGGTTTTTTGTACGGTGATGAGTTTTTGGACAACCTTGTGGATTGTAACTCGTGCGGTCACCATAACCAGTTTAGCAACGTTTTTCAGCAGCAGCAGAACTACAACACTGTTCCTCAGAACTATGCCGTGGTTCCAGTTCAGGTGCTGCAACAATCGCAGCACTTTCAACCGGGTTTGGAATTCGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTATTAGCCAAAGTGTATCAGTTTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATCTCAGTGTCGTATTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCACTGGACAGAGAGGCCAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACAAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGACCAAATGCTCTCCACAACACTATTCAATGAAGTTGGAGGAACCATTTTCCCATCTTTCTAG 1077 0.4847 MLKEGTNNVGVGGSSSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGSLLVEPDHEPEHGFVNEVEEEEEEVFDEYDDEIEAASWLLPHPLKGNEEEENGFLYGDEFLDNLVDCNSCGHHNQFSNVFQQQQNYNTVPQNYAVVPVQVLQQSQHFQPGLEFDSSKAGFSYDGSISQSVSVSSMEVGVVPESTISDISVSYSKSPIGTSDLFPPLPMPSHLTPLDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSTTLFNEVGGTIFPSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00892 358 Pfam CCT motif 289 331 IPR010402 GO:0005515
Viun4g00892 358 CDD Bbox1_BBX-like 21 64 - -
Viun4g00892 358 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 344 IPR045281 GO:0009909
Viun4g00892 358 SMART bboxneu5 17 64 IPR000315 GO:0008270
Viun4g00892 358 SMART bboxneu5 65 107 IPR000315 GO:0008270
Viun4g00892 358 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Viun4g00892 358 ProSiteProfiles CCT domain profile. 289 331 IPR010402 GO:0005515
Viun4g00892 358 CDD Bbox1_BBX-like 64 107 - -
Viun4g00892 358 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Viun4g00892 358 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00892 Viun-Chr4 7806976 7809173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00892 1 358 C2C2-CO-like Transcription Factor Family AT3G02380 54.865 1.71e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Viun4g00892 zf-B_box 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00892 - K12135 gmx:100782635 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00892 4 7806976 7809173 Viun5g00341 5 2016306 2018809 PCT