Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00887 ATGACAATGCCCTTTCTTACGAAGTTTAACAGTATTGAGATGCTTCTGAATACATCGAACTCTGTTAGTGCATCCAGTAAAAGATGGCACTCTGCATTCATGGCCATCTATTGCTCCCGAGCTATCATGTCACTCTCCACTCGAAACAAAATCAAAGCAAAAGTCTCACCGCCACCGACGCCACCGCCATATTTCGTCATGGTTGATTTGAGCCCTCACCATTCCTTTGGTATTGACCAAACAGTCCTCACGGATATTGTCAAAGAAAAAGACCATCGGAACCTTGATAACTTTGGTGGAGTTGAAGGGGTGGCAACAGCCCTTGAAACCCACCTTGAGTATGGTATCAAAGGTGATGATGGTGAAGACATCACACGTAGAACACAAGTGTTTGGTTCCAACACTTACCACAAACCACCTTCCAAAGGTTTCTTCCACTTTGTGGTGGAAGCCTTTAAGGATGTCACTATTCTCATCCTTTTGGCTTGTGCTGCTCTTTCCCTTGGCTTTGGCATCAAGGAACATGGAATCAAAGAAGGTTGGTACGACGGTGGAAGCATCTTCGTTGCAGTGTTCATTGTGGTTTCCTTGTCGGCAGTGAGCAACTTCAGACAGAACAGACAGTTTGACAAGCTGTCTCAGGTGAGCAATGACATACAAATCGATGTGGTGAGAAGTGGGAGGCGTCAACACGTGTCAATCTTTGAAATAGTGGTTGGTGATGTCATTTGCTTGAAGATTGGTGATCAAGTGCCAGCAGATGGGTTGTTCATAGAAGGGCATTCACTGAGAGCAGATGAATCAAGCATGACAGGAGAGAGTGATCATGTTGAGATTAGTAGACAGCACCCATTTTTGTTCTCGGGCACCAAGGTCGCTGATGGGTATGCGAAGATGCTCGTTACCTCGGTTGGTATGAACACAACATGGGGTCAAATGATGAGTTCGATAAGCCGAGATAATGATGAGCAAACTCCTTTGCAAGAGAGGCTAAACAAGCTAACATCGTCCATTGGAAAGGTTGGTTTGGCTGTGGCTTTTCTTGTTCTTGTTGTTTTGTTGGTTAGGTACTTCACAGGGAACACGAAGGATGACAATGGGGTGAGAGAGTACAATGGAAGCAAGACCACGTTTGATGATATAATGAATGCTGTTGTGGGAATTGTTGCTGATGCAGTTACCATTGTTGTTGTTGCAATCCCCGAGGGTCTTCCATTGGCTGTGACTCTCACTCTGGCTTATTCAATGAAGAAAATGATGGCTGACCAAGCAATGGTGAGAAAGCTCTCAGCGTGTGAGACAATGGGTTCTGCCACCACAATTTGTACTGATAAGACTGGGACTCTCACACTCAATGAGATGAAAGTGACCAAGTTCTGGATTGGCCAAGAACCCGTGGCGGAAACTGAAAATGCCAACTCAAAGGTTGCTCCGTTTGTTCTTCAACTTATCAAAGAAGGGGTGGCTCTAAACACAACCGGTAGTGTGCACAAGTCCAATAAACCAGGTTCTGAATTTGAGTTTTCAGGTAGTCCCACAGAAAAAGCAATCCTATCTTGGGCAGTTCTGGAATTGAACATGGAGATGGAGCACTTGACAAAAGGCTGTTCCATCATTCAGGTTGAGACCTTCAACTCAAAGAAGAAAAAGAGTGGAGTTTTGTTGAGAAGGAAGGCAGACAACACAGTTAGTGCTCACTGGAAAGGAGCAGCTGAGATGGTACTAAAGATGTGCTCAAGATACTATGATGTTTCTGGTACTGTGAGAGATCTTGACATTGATGCAATGTTGAAGTTTGAACACATCATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTACCAGAGGAAGAGCTTGGAGATGAAAACACAACGGGGAAAGTGAAAGACAGCGGTTTGACATTGTTAGGAGTGGTTGGGATTAAGGATCCATGTCGTCCAGGGGTGAAGAATGCTGTGGAAGCTTGCCAAAATGCTGGTGTGAATGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAGGGCTATAGCAAGCGAATGTGGCATACTGAGGCCAGATCAAGACACGGCAGGAGCAGTGATTGAAGGAGAGGAATTTCGCAACTACACACCTGAAGAGAGGTTGGAGAAGGTGGAAAAAATCTGTGTGATGGCTAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGTCTGAAGCAGAAAGGCCATGTAGTTGCTGTTACCGGGGATGGCACAAATGACGCACCAGCACTGAAAGAAGCTGACATTGGACTCTCTATGGGAATTCAAGGCACTGAAGTGGCAAAAGAGAGCTCAGACATTGTTATTTTGGATGACAATTTTGCATCTGTGGTCACTGTCTTAAGGTGGGGAAGGTGTGTTTACAACAACATCCAGAAGTTCATTCAGTTTCAGTTGACAGTGAATGTTGCAGCACTTGCTATCAACTTTGTGGCAGCAGTGTCAGCAGGGGAAGTGCCACTCACAGCAGTACAATTGTTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCACTTGCAACAGAAAAACCCACCAATGAATTGATGGACAAACCACCAGTTGGTAGAACAAAACCTCTCATCACCAATGTGATGTGGAGGAATCTATTGGCTCAAGCTTTGTACCAGATAGCAGTTTTGCTGACTCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTGACATCAGGGGTGAATGACACATTGATTTTCAACACATTTGTTCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTGTTCAAAGGCATACACAGGAGCAAGTTGTTTTTAGGCATCATTGGCATAACAATAATCCTTCAAGTTGTTATGGTTGAGTTTCTGAAGAAATTTGCAGACACAGAGAGGCTAAACTGGGGGCAATGGGCTATCTGCATTGGTTTAGCTGCAGTTTCCTGGCCAATAGGTTGGGTTGTGAAGTTGATACCTGTCCCAGAGAAACCATTTCTCAACTTTTTGAGACTGAAGAAATGA 3063 0.4427 MTMPFLTKFNSIEMLLNTSNSVSASSKRWHSAFMAIYCSRAIMSLSTRNKIKAKVSPPPTPPPYFVMVDLSPHHSFGIDQTVLTDIVKEKDHRNLDNFGGVEGVATALETHLEYGIKGDDGEDITRRTQVFGSNTYHKPPSKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGIKEGWYDGGSIFVAVFIVVSLSAVSNFRQNRQFDKLSQVSNDIQIDVVRSGRRQHVSIFEIVVGDVICLKIGDQVPADGLFIEGHSLRADESSMTGESDHVEISRQHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISRDNDEQTPLQERLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDDNGVREYNGSKTTFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWIGQEPVAETENANSKVAPFVLQLIKEGVALNTTGSVHKSNKPGSEFEFSGSPTEKAILSWAVLELNMEMEHLTKGCSIIQVETFNSKKKKSGVLLRRKADNTVSAHWKGAAEMVLKMCSRYYDVSGTVRDLDIDAMLKFEHIIQGMAASSLRCIAFAHVEVPEEELGDENTTGKVKDSGLTLLGVVGIKDPCRPGVKNAVEACQNAGVNVKMITGDNVFTARAIASECGILRPDQDTAGAVIEGEEFRNYTPEERLEKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTNELMDKPPVGRTKPLITNVMWRNLLAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIIGITIILQVVMVEFLKKFADTERLNWGQWAICIGLAAVSWPIGWVVKLIPVPEKPFLNFLRLKK 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00887 1020 SFLD C1.7: P-type atpase like 424 803 - -
Viun4g00887 1020 Pfam haloacid dehalogenase-like hydrolase 439 764 - -
Viun4g00887 1020 ProSitePatterns E1-E2 ATPases phosphorylation site. 444 450 IPR018303 -
Viun4g00887 1020 Gene3D - 120 318 - -
Viun4g00887 1020 SMART Cation_ATPase_N_a_2 97 172 IPR004014 -
Viun4g00887 1020 Gene3D - 150 1004 - -
Viun4g00887 1020 NCBIfam calcium-translocating P-type ATPase, PMCA-type 90 1007 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Viun4g00887 1020 FunFam Calcium-transporting ATPase 645 795 - -
Viun4g00887 1020 PRINTS H+-transporting ATPase (proton pump) signature 599 617 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00887 1020 PRINTS H+-transporting ATPase (proton pump) signature 750 766 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00887 1020 PRINTS H+-transporting ATPase (proton pump) signature 782 807 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00887 1020 FunFam Calcium-transporting ATPase 452 651 - -
Viun4g00887 1020 Gene3D - 439 795 IPR023214 -
Viun4g00887 1020 Pfam Cation transporter/ATPase, N-terminus 99 167 IPR004014 -
Viun4g00887 1020 Pfam E1-E2 ATPase 220 420 - -
Viun4g00887 1020 SUPERFAMILY HAD-like 440 855 IPR036412 -
Viun4g00887 1020 Pfam Cation transporting ATPase, C-terminus 835 1005 IPR006068 -
Viun4g00887 1020 Gene3D - 452 651 IPR023299 GO:0000166
Viun4g00887 1020 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 448 656 IPR023299 GO:0000166
Viun4g00887 1020 NCBIfam HAD-IC family P-type ATPase 723 831 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00887 1020 NCBIfam HAD-IC family P-type ATPase 385 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00887 1020 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Viun4g00887 1020 PRINTS P-type cation-transporting ATPase superfamily signature 666 676 - -
Viun4g00887 1020 PRINTS P-type cation-transporting ATPase superfamily signature 266 280 - -
Viun4g00887 1020 PRINTS P-type cation-transporting ATPase superfamily signature 442 456 - -
Viun4g00887 1020 PRINTS P-type cation-transporting ATPase superfamily signature 644 655 - -
Viun4g00887 1020 PRINTS P-type cation-transporting ATPase superfamily signature 774 786 - -
Viun4g00887 1020 SUPERFAMILY Calcium ATPase, transmembrane domain M 99 1007 IPR023298 -
Viun4g00887 1020 FunFam Calcium-transporting ATPase 194 318 - -
Viun4g00887 1020 SFLD p-type atpase 424 803 IPR044492 -
Viun4g00887 1020 SUPERFAMILY Calcium ATPase, transduction domain A 220 316 IPR008250 -
Viun4g00887 1020 PANTHER CATION TRANSPORTING ATPASE 67 1007 - -
Viun4g00887 1020 FunFam Calcium-transporting ATPase 767 1009 - -
Viun4g00887 1020 CDD P-type_ATPase_Ca_PMCA-like 124 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00887 Viun-Chr4 7675583 7679200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00887 12 1020 Primary Pumps ATPases AT3G22910 68.904 0.0 1341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00887 K01537 - gmx:100793918 1739.93