Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00884 ATGAGGAAACCTGACATCATGGGAAAAGACATTAAACTCAACACCACCACCATTAACACCACCACCAACACCACCACCAACAACAACAACAACATTAATAAGAGCAAGCTAAGAAAAGGGTTGTGGTCGCCTGAGGAAGATGAGAAACTGATAAGGTACATGATCACTAAGGGACAAGGATGTTGGAGTGACATTGCGAGAAATGCTGGGCTTCAAAGGTGCGGCAAAAGTTGTCGTCTTCGTTGGATCAACTACCTCAGACCTGATCTCAAACGTGGTGCATTCTCACCCCAAGAGGAAGAACTCATCATTCACTTGCACTCCATTCTTGGAAACAGATGGTCTCAGATTGCTGCACGTCTTCCTGGTCGCACTGACAATGAAATCAAGAATTTCTGGAACTCCACACTGAAGAAAAGGTTGAAAATGAACAACAACAACAACAACACTTCATCACCAAACAACAGTGACACATCAGACCCTGGAGATGTCATGGGGGGGATAATGGCGATGAATGATCAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATCCATGCAATCCATGCAAGCCAATAACATGCCACTAACCGACCAATTTGACCCCTTTCCCTTGTTGTCCAACCGCTATGACATGACCACCGGCGCAGCCGGTTTCCTTCACAACATGGCTGCATGCTTAACACAAGTTGGTATGGTAGATCATGATGATGGGGTTGTTCATGGTGGTTATGGGGCATTGGAACCTAATAAAATGGGGTTAGAAAGCGACTTTTCCCTTCCTCCACTAGAGAGTAGAAGCATTGAGGAGAATTCTAGTACCCCAATTGATGAGAAAAGCCATAACAACAACCACTTCAAGAACAGTTGCTTCAGTAACACTGATAATCACCATCATCATCATCATCATCATCGTAATTTTCAAACCTCCAACAACGTAGTTGTAGAGGATTTATTTGGTTTTGGAAATCATGGGCAAGGGGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCCTATTTCCCTTCCCTTGATTTCCAAGTTTAA 1086 0.4392 MRKPDIMGKDIKLNTTTINTTTNTTTNNNNNINKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKMNNNNNNTSSPNNSDTSDPGDVMGGIMAMNDQHDLMTMCMDSSSSTSSSSMQSMQANNMPLTDQFDPFPLLSNRYDMTTGAAGFLHNMAACLTQVGMVDHDDGVVHGGYGALEPNKMGLESDFSLPPLESRSIEENSSTPIDEKSHNNNHFKNSCFSNTDNHHHHHHHHRNFQTSNNVVVEDLFGFGNHGQGENFRMGEWDFEGLMQDMSYFPSLDFQV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00884 361 MobiDBLite consensus disorder prediction 142 161 - -
Viun4g00884 361 MobiDBLite consensus disorder prediction 272 314 - -
Viun4g00884 361 CDD SANT 94 137 IPR001005 -
Viun4g00884 361 SUPERFAMILY Homeodomain-like 37 133 IPR009057 -
Viun4g00884 361 CDD SANT 42 86 IPR001005 -
Viun4g00884 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Viun4g00884 361 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Viun4g00884 361 MobiDBLite consensus disorder prediction 142 163 - -
Viun4g00884 361 Gene3D - 93 163 - -
Viun4g00884 361 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Viun4g00884 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Viun4g00884 361 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Viun4g00884 361 Pfam Myb-like DNA-binding domain 92 136 IPR001005 -
Viun4g00884 361 SMART sant 91 139 IPR001005 -
Viun4g00884 361 SMART sant 38 88 IPR001005 -
Viun4g00884 361 FunFam MYB transcription factor 36 92 - -
Viun4g00884 361 PANTHER MYB DOMAIN PROTEIN 55 32 315 - -
Viun4g00884 361 Gene3D - 36 92 - -
Viun4g00884 361 FunFam Transcription factor MYB46 93 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00884 Viun-Chr4 7650193 7654133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00884 1 361 MYB Transcription Factor Family AT3G08500 45.526 8.79e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g00884 Myb_DNA-binding 5.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00884 K09422 - gmx:100813660 524.242