Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00881 ATGTCTGGTCATGATCACCATCACCAACATCTTTCTTCCAATCCCTTCGCGCTCCTCTCCACTCACTCCGATTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTATTCGAGACTAGCTCGCGCCTCTGTTCCTGCGACGACACTGACATTAACCCTTTCTCCGGCGCCGTCTGCGACGTCCATCGCTCCGAACACGTGCTAGGGTTAGGGTTAGGGTTTGGCGTTGACATTGATTCCCAAACGCGGGACAACGATGATAATAATAGCGATAGACTTTTCAATTTTGCGTTGGGGGATGGTTCGGGAGGGCTTAGGGTTGTAGCGTTCGGTTCGGATTCGGATGATTCGAGTGGCGGGGAGGGCGGGGTTCGTGATGAGGGTGGTGGGTTTGACGATTTCGATGTTCGGTTTTGTTGGGATAGTCTCTGTTTGGATGATCAGAGGACACTGAATGATGGTTTTGAATGGGAGGAAGTTGAGCAGAGGGTGAATGATAGGGAGGATTCGGGTTTGGTGGTTGATGAGGTTGAAGTTGAAGTTGAAGATGATGGAGATGGTGATTCGGTGGGGTTTACTAATGCCGACGAGGAAGAGGAAGAGGAAGAGGAGGAGGATGGTGGTGAAGAGGCGCTGAGGTACCTTGAGTGGGAGATTCTCTTGGCGGTTAACAATTCGGAGAGGAATGTTAACAATGGTGATGGTTTGGAGCATGAGGGTGTAGCTGGTGCTGCTGATTTGCTGACAATTCGAGATGGTTATGTGTATGCGGCGGAGTATGATGTTTTATTTGGGCAGTTTCTCGAGAATGAGAGTGTCTTGAAGGGAAGTCCTCCCGCCGCAAAGAGTGTTGTGGAGAGTCTTCCATTGGTGGAGTTGTCGAAGGAGGAGCTGTTGCAGGGGAAGAACTTGGCATGCGCCATTTGCAAAGATGAGATTTTGTTGGAGGAGAAGGTCAGGAGGTTGCCTTGTTCCCACTGTTACCATGGCGATTGCATTTTGCCATGGTTGGAAATTCGCAACACATGCCCAGTTTGTCGGTTTGAGCTGCCTACAGATGATCCGGACTATGAACAGAGGAAGGTTCACAGGGCTGCTCATGATCTGTTGGAGCTTGCAACGGCAGGGATGCAATTTTGA 1149 0.5039 MSGHDHHHQHLSSNPFALLSTHSDSDSDSDSVSCFVTDLFETSSRLCSCDDTDINPFSGAVCDVHRSEHVLGLGLGFGVDIDSQTRDNDDNNSDRLFNFALGDGSGGLRVVAFGSDSDDSSGGEGGVRDEGGGFDDFDVRFCWDSLCLDDQRTLNDGFEWEEVEQRVNDREDSGLVVDEVEVEVEDDGDGDSVGFTNADEEEEEEEEEDGGEEALRYLEWEILLAVNNSERNVNNGDGLEHEGVAGAADLLTIRDGYVYAAEYDVLFGQFLENESVLKGSPPAAKSVVESLPLVELSKEELLQGKNLACAICKDEILLEEKVRRLPCSHCYHGDCILPWLEIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELATAGMQF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00881 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 196 354 - -
Viun4g00881 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 356 IPR013083 -
Viun4g00881 382 SMART ring_2 309 349 IPR001841 -
Viun4g00881 382 MobiDBLite consensus disorder prediction 184 212 - -
Viun4g00881 382 FunFam E3 ubiquitin-protein ligase RING1-like 269 356 - -
Viun4g00881 382 Pfam Ring finger domain 308 350 IPR001841 -
Viun4g00881 382 SUPERFAMILY RING/U-box 296 357 - -
Viun4g00881 382 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00881 Viun-Chr4 7566266 7568071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00881 220 364 C3H Transcription Factor Family AT3G02340 49.367 3.02e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00881 - - vra:106778727 672.93