Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00860 ATGCACTTATCGCCCTCACCCACTCCACACCCCTCTTTTTTATCTCCACTCACTACCAATTCCAATCCAACACCAACACCTCTACCAGTTGCCCTTTCACTGTTTCACTCTCGCCACAAACAAAAAACAGTTTCTTTCATCAACTTGGTCTTTGTTTCTTCCACACATACCATTGACTCTGGACTCCAGAGTCAACTACAGCCTCATATACCCAAAAGGGGGTTGATTTTGGAACCATGGTTCGCAGTTCGCACACCCCAGATCAAAATAATGTGCTTTTTCCATCATGGTGTTGTTATTCTGCTGATTAGGTGGTGCAAGAAACGTTCTGCTCATCTTAGACTATCTGCAAGTGAGTCTAGTGTAACAACTCTTCCTATACGAACAAATGGATTGGGAACAAGTACCGACTTTAGTGCATCACTCGATAGTTCCATTGCCACATCAAGGTCAGAAAGTATCAAGAAAAGTTCCCATTTCAGTTGGTGGAGTCATCAAAACAAAGACCGGTTTGCTTCAGCATCAGGCATTCTAAAGTATTCATACAAAGAAATTCAAAAGTCCACGCAAAATTTCACAACAACCCTGGGACAAGGATCATTTGGGACAGTTTATAAAGCGACAATGCCTACAGGGGAGGTTGTAGCAGTGAAGGTGCTTGCACCCAATTCTAAACAAGGGGAGAAAGAATTCCACACAGAGGTATTTCTGCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGGCAACGCATACTGGTTTATCAGTATATGAGTAATGGAAGTTTAGCAAATCTTTTATATGGTGAAGAAAAGGGATTGAGTTGGGATGAAAGGCTGCAAATTGTTCTTGATATTTCACATGGAATAGAATACCTTCATGAAGGAGCAATTCCACCTGTCATACATCGCGATTTAAAGTCTGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCTGATTTTGGACTCTCAAAAGAAGAGATCTTTGATGGCAGGAATTCTGGTCTGAAAGGTACATATGGGTACATGGATCCTGCATACATTTCCACAAGCAAGTTAACAACTCAGAGTGACATATACAGTTTTGGCATCATAGTTTTTGAGCTCATCACTGCCATCCACCCTCATCAAAACTTGATGGAGTATGTCAACCTTGCTGCAATGGATCATGATGGTATAGATGAGATACTTGACAAGAAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAACTTGCTAAGATTGGACACAAATGTTTGCACAAATCACCCAAGAAACGACCCTCCATAGGTGAGGTTTCTCAGCTCATATCAAGAATCAAGCAACGGCGTGAGCGGCGTCTGACAGAAGATAACTTGTCATTTGCAAGCAACAACTTTTCTCGAGCTGTGAGTCGATTAGAAGATCGACAGGTTGAACTTAGCAGGATGTCAACCATTAACCTAACAGAAACTGTATGA 1497 0.4162 MHLSPSPTPHPSFLSPLTTNSNPTPTPLPVALSLFHSRHKQKTVSFINLVFVSSTHTIDSGLQSQLQPHIPKRGLILEPWFAVRTPQIKIMCFFHHGVVILLIRWCKKRSAHLRLSASESSVTTLPIRTNGLGTSTDFSASLDSSIATSRSESIKKSSHFSWWSHQNKDRFASASGILKYSYKEIQKSTQNFTTTLGQGSFGTVYKATMPTGEVVAVKVLAPNSKQGEKEFHTEVFLLGRLHHRNLVNLVGYCVDKGQRILVYQYMSNGSLANLLYGEEKGLSWDERLQIVLDISHGIEYLHEGAIPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTQSDIYSFGIIVFELITAIHPHQNLMEYVNLAAMDHDGIDEILDKKLVGKCNLEEVRQLAKIGHKCLHKSPKKRPSIGEVSQLISRIKQRRERRLTEDNLSFASNNFSRAVSRLEDRQVELSRMSTINLTETV 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00860 498 Gene3D Phosphorylase Kinase; domain 1 152 265 - -
Viun4g00860 498 Pfam Protein kinase domain 194 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00860 498 CDD STKc_IRAK 196 452 - -
Viun4g00860 498 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 266 475 - -
Viun4g00860 498 Gene3D Transferase(Phosphotransferase) domain 1 266 475 - -
Viun4g00860 498 MobiDBLite consensus disorder prediction 1 21 - -
Viun4g00860 498 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 164 265 - -
Viun4g00860 498 SMART serkin_6 190 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00860 498 ProSitePatterns Protein kinases ATP-binding region signature. 196 218 IPR017441 GO:0005524
Viun4g00860 498 PANTHER OS01G0750732 PROTEIN 4 469 - -
Viun4g00860 498 ProSiteProfiles Protein kinase domain profile. 190 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00860 498 SUPERFAMILY Protein kinase-like (PK-like) 158 447 IPR011009 -
Viun4g00860 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00860 Viun-Chr4 7242409 7247497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00860 176 449 Receptor kinase-like Gene Family AT3G19300 42.049 3.41e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Viun4g00860 Pkinase 8.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00860 - - vun:114182767 990.719