Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00851 ATGCTATATTATATACGCGAATTCCTCACTCACACCACCCACTTTCTCTTCTCCTTTCATCCTATTTTTTTCCTTCTTTTATCTTCCCTTAGTTTGAAGATGGGAAGAGGAAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGTCGCCAAGTCACCTTCTCCAAAAGGAGAACCGGGCTGCGCAAGAAAGCTAATGAAATCTCTGTGCTCTGTGATGCTCAAGTGGCACTGATTGTGTTTAATGCCAAAGGGAAACTCTTCGAGTATTCGTCTGAATCCAGTATGGAAAACGTCCTTGAACGATATGAGAGACATGCCCATATAGGGCAACTTGTTGAAGATGGTGATGAATCACAGGGCAATTGGTCCTTGCAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAAAAACTTAAGGAACTTTGTTGGACAAGATCTGGATCCCTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTATAAAGCGCATCCGAACTAGAAAGAACCAAGTGATGAATGAATCCATCTCAGATATGCAGAAAAAGGTAACCGGAGATTTACTAATGCAAAGCAACTGCAGGAGCAAAATGGGACGCTTACAAAGAAGATTAAGGACAAAGGAAAAGCAGTGGCTGAACGTTCACAATGTGTGCCACAAACCATTCCTCAACCATGCCCTCCACAGCTACAACCACAACATAGACTTGTTCCTTCTTTAA 741 0.4318 MLYYIREFLTHTTHFLFSFHPIFFLLLSSLSLKMGRGRVQLKQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSSESSMENVLERYERHAHIGQLVEDGDESQGNWSLQCFKLTGKVEVLEKNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISDMQKKVTGDLLMQSNCRSKMGRLQRRLRTKEKQWLNVHNVCHKPFLNHALHSYNHNIDLFLL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00851 246 SUPERFAMILY SRF-like 35 112 IPR036879 GO:0003677|GO:0046983
Viun4g00851 246 Gene3D - 46 118 IPR036879 GO:0003677|GO:0046983
Viun4g00851 246 FunFam MADS-box transcription factor MADS-MC 46 119 - -
Viun4g00851 246 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677|GO:0046983
Viun4g00851 246 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677|GO:0046983
Viun4g00851 246 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677|GO:0046983
Viun4g00851 246 ProSiteProfiles K-box domain profile. 120 213 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun4g00851 246 Pfam K-box region 117 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun4g00851 246 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Viun4g00851 246 CDD MADS_MEF2_like 35 108 IPR033896 GO:0000977|GO:0045944
Viun4g00851 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 44 90 IPR002100 GO:0003677|GO:0046983
Viun4g00851 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 34 198 - -
Viun4g00851 246 ProSitePatterns MADS-box domain signature. 36 90 IPR002100 GO:0003677|GO:0046983
Viun4g00851 246 Coils Coil 157 177 - -
Viun4g00851 246 SMART madsneu2 34 93 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00851 Viun-Chr4 7042490 7058224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00851 34 245 MADS-box Gene Family AT1G26310 52.273 1.92e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun4g00851 K-box 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00851 K09264 - gmx:100787971 298.901