Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00850 ATGCTATATTATATACGCGAATTCCTCACTCACACCACCCACTTTCTCTTCTCCTTTCATCCTATTTTTTTCCTTCTTTTATCTTCCCTTAGTTTGAAGATGGGAAGAGGAAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGTCGCCAAGTCACCTTCTCCAAAAGGAGAACCGGGCTGCGCAAGAAAGCTAATGAAATCTCTGTGCTCTGTGATGCTCAAGTGGCACTGATTGTGTTTAATGCCAAAGGGAAACTCTTCGAGTATTCGTCTGAATCCAGTATGGAAAACGTCCTTGAACGATATGAGAGACATGCCCATATAGGGCAACTTGTTGAAGATGGTGATGAATCACAGGGCAATTGGTCCTTGCAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAAAAACTTAAGGAACTTTGTTGGACAAGATCTGGATCCCTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTATAAAGCGCATCCGAACTAGAAAGAACCAAGTGATGAATGAATCCATCTCAGATATGCAGAAAAAGGCAAAGCAACTGCAGGAGCAAAATGGGACGCTTACAAAGAAGATTAAGGACAAAGGAAAAGCAGTGGCTGAACGTTCACAATGTGTGCCACAAACCATTCCTCAACCATGCCCTCCACAGCTACAACCACAACATAGACTTGTTCCTTCTTTAACACCTCGTGAGAATTTACAAGCTGCAGCGGCACTGGAGGAAGTGGATGAAGGACGAGCAGTTCCTAGTACGACTACTCTGATCCCACCATGGATGCTGCATCAGTTTGCAAGATGA 837 0.4444 MLYYIREFLTHTTHFLFSFHPIFFLLLSSLSLKMGRGRVQLKQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSSESSMENVLERYERHAHIGQLVEDGDESQGNWSLQCFKLTGKVEVLEKNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISDMQKKAKQLQEQNGTLTKKIKDKGKAVAERSQCVPQTIPQPCPPQLQPQHRLVPSLTPRENLQAAAALEEVDEGRAVPSTTTLIPPWMLHQFAR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00850 278 PANTHER SERUM RESPONSE FACTOR HOMOLOG 34 195 - -
Viun4g00850 278 Coils Coil 157 203 - -
Viun4g00850 278 Pfam K-box region 117 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun4g00850 278 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677|GO:0046983
Viun4g00850 278 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677|GO:0046983
Viun4g00850 278 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677|GO:0046983
Viun4g00850 278 Gene3D - 46 118 IPR036879 GO:0003677|GO:0046983
Viun4g00850 278 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Viun4g00850 278 ProSiteProfiles K-box domain profile. 120 210 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun4g00850 278 CDD MADS_MEF2_like 35 108 IPR033896 GO:0000977|GO:0045944
Viun4g00850 278 FunFam MADS-box transcription factor MADS-MC 46 119 - -
Viun4g00850 278 SUPERFAMILY SRF-like 35 112 IPR036879 GO:0003677|GO:0046983
Viun4g00850 278 ProSitePatterns MADS-box domain signature. 36 90 IPR002100 GO:0003677|GO:0046983
Viun4g00850 278 SMART madsneu2 34 93 IPR002100 GO:0003677|GO:0046983
Viun4g00850 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 44 90 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00850 Viun-Chr4 7042490 7058295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00850 34 229 MADS-box Gene Family AT1G26310 56.585 5.83e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun4g00850 K-box 5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00850 K09264 - gmx:100787971 397.512