Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00837 ATGAGGCTTGTCATCTCAGCTTTCTGTGGTCTTGTGTTATTCTCATGTGCAGTTGCTTATGATCCTTTGGATCCAAACGGAAACATAACAATCAAATGGGATATCATGTCTTGGACACCAGATGGCTATGTGGCTACTGTAACAGTTCACAATTTCCAAATGTTTCGGCACATCATGAATCCTGGGTGGACCTTGGGATGGACATGGGCCAAGAGAGAAGTGATTTGGTCCATGGTAGGAGCTCAAGCCACAGAGCAAGGAGATTGTTCTAAGTTCAAAGGCAACATACCTCATTGCTGCAAGAAAACTCCAACAGTTGTAGACCTTCTCCCTGGTGTTCCTTACAACCAGCAATTCTCAAACTGCTGCAAGGGTGGAGTGGTGGCTGCATGGGGCCAAGATCCTTCACAGGCTATCTCATCCTTCCAAGTGAGTGTAGGCCAAGCTGGTACCACAAACAGGACAGTGAAACTTCCCAAGAACTTCACCCTCTTGGCTCCTGGACCAGGCTATTCCTGTGGCCCTGCCAAGGTTGTTCCTTCCACAACTTTCCTTACACCTGACAAACGCCGCAAGACTCAAGCACTAATGACTTGGAACGTTACCTGCACATACTCACAGTTCCTGGCAAGAAAGAATCCAAGTTGTTGTGTATCTTTGTCCTCCTTCTATAATGAAACTATCACCCCTTGTCCCTCTTGTGCCTGTGGCTGCCACAACAAGAAGAATTGTGTCAAGAGTGACTCCAAAATTCTCAGCATGGTGGGTCTTCACACTCCCAAGAAAGACAATGAACCATTGCTGCGGTGCACACATCACATGTGTCCAATCAGGGTTCACTGGCATGTCAAGGTTAACTATAAGGAATATTGGAGAGTCAAGATTGCCATTACAAACTTCAATTACAGGATGAATCACTCCCTGTGGTCTCTTGCTGTTCAGCATCCAAATCTTAACAATCTCACCCAAGTTTTCAGTTTCAATTACAAGCCTCTTCTTCCCTACGGTTCCATAAATGACACTGGAATGTTCTATGGCATGAAATACTTCAATGATCTTCTAATGGAAGCTGGACCAACAGGGAATGTTCAATCAGAGTTGCTTCTTCAGAAGGACAAGGATGCATTCACATTCAAGCAGGGGTGGGCTTTTCCTCGCAAGATCTACTTTAATGGCGATGAATGCATGATGCCTCCACCTGACACCTACCCATTTCTACCTAACTCAGCACCTCCACGCCTAATTACCTTCCCACTATCTATTTTCTTACTGTTTTTCTTTTTAGCAGTTTGGTGA 1296 0.4514 MRLVISAFCGLVLFSCAVAYDPLDPNGNITIKWDIMSWTPDGYVATVTVHNFQMFRHIMNPGWTLGWTWAKREVIWSMVGAQATEQGDCSKFKGNIPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSQAISSFQVSVGQAGTTNRTVKLPKNFTLLAPGPGYSCGPAKVVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCHNKKNCVKSDSKILSMVGLHTPKKDNEPLLRCTHHMCPIRVHWHVKVNYKEYWRVKIAITNFNYRMNHSLWSLAVQHPNLNNLTQVFSFNYKPLLPYGSINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDKDAFTFKQGWAFPRKIYFNGDECMMPPPDTYPFLPNSAPPRLITFPLSIFLLFFFLAVW 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00837 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0016020
Viun4g00837 431 PANTHER PROTEIN COBRA 8 421 IPR006918 GO:0010215|GO:0016020
Viun4g00837 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0016020
Viun4g00837 431 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00837 Viun-Chr4 6754940 6757548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00837 1 427 COBRA Gene Family AT3G29810 67.654 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00837 - - gmx:100798678 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00837 4 6754940 6757548 Viun5g00424 5 2422994 2425772 PCT
Viun5g00423 5 2416014 2419655 Viun4g00837 4 6754940 6757548 PCT