Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00836 ATGTTTTTCCCTTTCACCTTCACACCCATGATCCGATCCTTCTTCAAACCCTGTCCATGCATTCTGCTTTTGCTTCTCTTCTCTTGCACGTGCTTCACTTCATCAGAAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGTTGGACACCTGATGGTTATGTTGCTGTTGTTACAATGAACAACTACCAAAAATACCGTCATATCTCAACACCTGGGTGGTCACTAGGATGGACATGGGCAAAGAAGGAGGTGATATGGAGCATGGTGGGAGGTCAGACCACTGAACAAGGGGATTGCTCAAGATTTAAGGGAAACATTCCACATTGCTGTAAAAAGAACCCCATAGTTGTAGATTTACTTCCTGGAACACCTTACAATCAACAAATTGCAAACTGCTGCAAAGGTGGTGTACTCAGCTCATGGGCACAGGATCAATCCAAAGCAGTTGCAGCCTTTCAAATCAGTGTAGGTAGTGCTGGCACCACCAACAAAACTGTCAAACTGCCACAAAGCTTCACCTTGAAAGCACCAGGCCCCGGTTACACATGTAGCCCGGCGAAAATTGTGAAACCAACTCAATTTATACAACCAGACAAAAGAAGAGTGACCCAAGCTCTCATGACATGGAATGTGACATGCACATATTCACAGTTTCTTGCTCAGAGAACACCCACTTGCTGCGTCTCGCTCTCGTCTTTCTATAATGATACTGTTGTTCCCTGCTCTACATGTGCATGTGGCTGCCAGGGCAACTCATCACTAACAGGGGACTGTGTAAATCCAGATTCACCACATCTAGCATCAGTTGTTTCCAACTCTGGACATGATAAAAGTAGTATTACACCTTTGGTTCGGTGTACTCGACATATGTGTCCTATCCGAGTTCACTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTGTTACTAATTTTAATTACAGGATGAACTATTCTGATTGGAACTTGGTTATTCAACATCCAAACTTTGAGAATCTGACCCAGCTTTTCAGTTTCAACTACCAGTCAATAACTCCCTACGGATCAATAAATGATACAGCAATGTTGTGGGGAGTTAAGTTCTACAATGATTTTCTCATGCAAGCTGGTTCTCTTGGTAATGTACAGTCAGAGCTACTATTCAGAAAAGATAAATCAACTTTCACTTTTGACAAGGGTTGGGCCTTCCCTCGGAGAGTCTATTTCAATGGTGACGTTTGTGTGATGCCACCACCTGATGCCTATCCATGGTTGCCTAATGCTGGTTCCAGGCAAGAGGTTCCCCTGCTTGTTTTGATGATGACATCTTTGGTGGCCTTAGTATTATTGCATGCATACGCTTAA 1380 0.4312 MFFPFTFTPMIRSFFKPCPCILLLLLFSCTCFTSSEAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNYQKYRHISTPGWSLGWTWAKKEVIWSMVGGQTTEQGDCSRFKGNIPHCCKKNPIVVDLLPGTPYNQQIANCCKGGVLSSWAQDQSKAVAAFQISVGSAGTTNKTVKLPQSFTLKAPGPGYTCSPAKIVKPTQFIQPDKRRVTQALMTWNVTCTYSQFLAQRTPTCCVSLSSFYNDTVVPCSTCACGCQGNSSLTGDCVNPDSPHLASVVSNSGHDKSSITPLVRCTRHMCPIRVHWHVKLNYKEYWRVKVTVTNFNYRMNYSDWNLVIQHPNFENLTQLFSFNYQSITPYGSINDTAMLWGVKFYNDFLMQAGSLGNVQSELLFRKDKSTFTFDKGWAFPRRVYFNGDVCVMPPPDAYPWLPNAGSRQEVPLLVLMMTSLVALVLLHAYA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00836 459 PANTHER PROTEIN COBRA 26 448 IPR006918 GO:0010215|GO:0016020
Viun4g00836 459 Pfam COBRA-like protein 61 224 IPR006918 GO:0010215|GO:0016020
Viun4g00836 459 PIRSF COBRA 10 459 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00836 Viun-Chr4 6749602 6754597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00836 14 457 COBRA Gene Family AT3G02210 72.523 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00836 - - gmx:100797383 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00424 5 2422994 2425772 Viun4g00836 4 6749602 6754597 PCT