Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00825 ATGGCTATCACCACCTCCTTAACACTCTTCTTCTTCCTTCTACACTTCTCGGCACACCTCCAAGCGTACACCCCAGATGAAATTTTTACCATCAATTGCGGCACAACTGGGGAGTCCTCCGACGGTCAGAGAACGTGGACCGGCGACGCAGACACAAAGTACTTATCTCCCCAAGAAGCCACTATTTCATACAAGGCAACAACACAGTCTATTTCCGCCGATCAAATCCCCTTCTCCACTTCACGCTTGTCCCGTTCCCAATTCAATTACTCCTTCCGAGTCTCCTCAGGCACCAAATTCGTTCGCCTCTTCTTCTACCCTGCCGACTACCCTTCCTTTCCCCGCAACCAAGCATCCTTCACCGTTCAATCCAACCAATTTACTCTCCTCAACGATTTCAACGCCTCTCTTAACGCCGACGCTCAAGCCACCGACACTATTTTCAAAGAATACGTGGTCAACGTCAACCACGGTAAGAGGCTTATCCTCACCTTCACTCCCTCTCATCCAAATTCATACGCTTTCATCAATGGAATCGAGGTACTTTCCATGCCAACGGATTTATATTACACACCAGCAAATGAGACAGGCTTCACGTTCCTCGGAAGTAGCACGCTGTACAACATTGGGACTAGCTTTGCGCTTCAGACTGAGCATAGGATCAAAACTGGATCGCAAGTAGAAATCCCACCACAAAACGACAGTGGTTTGTTCAGGAATTGGGTTAACGAAAAAGATTATTTTATTGAACAAAATTCACAGTTGAATGATGTACCAACTGACTACACTTATAAGAGGATAACCGTGAATCCTGATTACGTGGCACCAAAGGAACTGTTCAGAACAGCGCGTAACATGGGCACAAACGCCACTTTTAACAATATGAGAAACCTCACTTGGGAGTTCCCCGTTGATTATGGCTTCACTTACGTTCTCAGGCTTCACTTTTGCGAGCTTGATCCCGACATTAATGACATCGGGGACAGGCAATTCTTCATTTACATAGCGAGCCAGTTGGCTGAAGAACGTGCAGATGTAATGAAATGGACTCAGAAAAAGAAAGGACTAGCTGTTCACAGAAACTACGCCGTTTTAATTCCCAATAATGGTACTCAAAAGAAGTTTAATCTCTTGCTCCAAATGCATCCTTACGAATACCATGTGGATTCGAGATACAGTGACGCCTTTCTGAACGGTGTTGAGATTTTCAAAATCAGTGAGGCCGGGTCAAACAATCTGGCGGGACCTAACCCTGACCCGTCTCAGACTCCACACAACAGCATTCATGGCCAAAACGGAAAGATCCGCTGGGGAAGTGGAAGGGTGATAATTGGCGTCGAAGTGGTGCTGCTATCCGACGTCGTTCTGATTTCTCTTGTCGTTTTCTTCGTCGCATTTTTAGGACACAAGAGAACCACATATACTAAGAGTAAGGATTACGAATCCAAGTCAACGACCACGTGGAATTCCTCCCTCCCGACAGATCTCTGCCGCCGCTTCTCTCTCGACGAGATGAGAGCGGCCACCCAAAACTTCGACGAGGTCTTCATCATCGGCACCGGAGGATTCGGCCAGGTATACAAGGGCTATATCGACGAGGGCTCCGTTCCCATCGCCATCAAGCGCCTTAAACCGGATTCACAGCAGGGGTCTCGCGAGTTCCTGAACGAAATCAAAATGCTTTCGCAACTACGCCACCTCAACGTCGTGTCCCTCATCGGCTACTGCAATGATAATAAGGAAATGATCTTGGTTTACGATTTCATGACACGTGGCAACCTCCGCGACCATCTGTACAACACGGACAATCCCACTATCTCGTGGAAGCAGCGGTTGCAGATATGCATCGGCGTGGCGCATGGACTGCATTATCTCCACACAGGAGCGAAGCACACGATCATCCACCGGGACGTGAAAACCACGAACATCCTGTTGGATGATAAGTGGGTGGCCAAGGTTTCGGACTTCGGACTTTCAAGGCTCGGGCCCATTGGAACTTCGAAGACCCACGTCAGCACCGATGTGAGGGGTAGCTTCGGATATTTGGATCCTGAGTATTATAAAAGATACCGTTTAACGGAGAAGTCTGACGTGTATTCTTTCGGAGTTGTGCTTTTTGAGATACTATGTGGTCGTCCCCCTTTGATTCACAGTGCGGAGAGGGAACAGGTTTCCCTTTCTAATTGGGTGAGACATTGTTATCAAAGTGGAACCATATCAGAGATTGTTGAGCCCACGTTGAAGGAGGAGATAGCAGCAGAATGCTTGAAGAAGTTTTGTGAGATTGGGATGAGTTGTTTGTCGGAAAATGGGTCCATGAGGCCGGCCATGGAGGATGTGGCTCGGATGCTGGAGTTTACTCTGGGGCTACAAGAAAGTGCGGAGCATCGTCAAAATGTTGATTTTGCTATTCCTAACTGA 2421 0.4779 MAITTSLTLFFFLLHFSAHLQAYTPDEIFTINCGTTGESSDGQRTWTGDADTKYLSPQEATISYKATTQSISADQIPFSTSRLSRSQFNYSFRVSSGTKFVRLFFYPADYPSFPRNQASFTVQSNQFTLLNDFNASLNADAQATDTIFKEYVVNVNHGKRLILTFTPSHPNSYAFINGIEVLSMPTDLYYTPANETGFTFLGSSTLYNIGTSFALQTEHRIKTGSQVEIPPQNDSGLFRNWVNEKDYFIEQNSQLNDVPTDYTYKRITVNPDYVAPKELFRTARNMGTNATFNNMRNLTWEFPVDYGFTYVLRLHFCELDPDINDIGDRQFFIYIASQLAEERADVMKWTQKKKGLAVHRNYAVLIPNNGTQKKFNLLLQMHPYEYHVDSRYSDAFLNGVEIFKISEAGSNNLAGPNPDPSQTPHNSIHGQNGKIRWGSGRVIIGVEVVLLSDVVLISLVVFFVAFLGHKRTTYTKSKDYESKSTTTWNSSLPTDLCRRFSLDEMRAATQNFDEVFIIGTGGFGQVYKGYIDEGSVPIAIKRLKPDSQQGSREFLNEIKMLSQLRHLNVVSLIGYCNDNKEMILVYDFMTRGNLRDHLYNTDNPTISWKQRLQICIGVAHGLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRLGPIGTSKTHVSTDVRGSFGYLDPEYYKRYRLTEKSDVYSFGVVLFEILCGRPPLIHSAEREQVSLSNWVRHCYQSGTISEIVEPTLKEEIAAECLKKFCEIGMSCLSENGSMRPAMEDVARMLEFTLGLQESAEHRQNVDFAIPN 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00825 806 SUPERFAMILY Protein kinase-like (PK-like) 485 787 IPR011009 -
Viun4g00825 806 PANTHER OS03G0124300 PROTEIN-RELATED 6 470 IPR046957 GO:0004672
Viun4g00825 806 Pfam Protein tyrosine and serine/threonine kinase 518 783 IPR001245 GO:0004672|GO:0006468
Viun4g00825 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Viun4g00825 806 SMART serkin_6 512 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00825 806 FunFam receptor-like protein kinase FERONIA 473 588 - -
Viun4g00825 806 FunFam FERONIA receptor-like kinase 213 406 - -
Viun4g00825 806 CDD STKc_IRAK 518 785 - -
Viun4g00825 806 FunFam FERONIA receptor-like kinase 28 185 - -
Viun4g00825 806 ProSitePatterns Protein kinases ATP-binding region signature. 518 541 IPR017441 GO:0005524
Viun4g00825 806 Pfam Malectin-like domain 31 405 IPR024788 -
Viun4g00825 806 Gene3D Transferase(Phosphotransferase) domain 1 589 803 - -
Viun4g00825 806 ProSiteProfiles Protein kinase domain profile. 512 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00825 806 Gene3D Phosphorylase Kinase; domain 1 471 588 - -
Viun4g00825 806 FunFam Receptor-like protein kinase FERONIA 589 804 - -
Viun4g00825 806 Gene3D - 26 185 - -
Viun4g00825 806 Gene3D - 214 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00825 Viun-Chr4 6630872 6635134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00825 23 796 Receptor kinase-like Gene Family AT3G51550 46.575 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun4g00825 Malectin_like 2e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00825 - - gmx:100799780 1110.9