Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00820 ATGCCAACCGATTTATATTACACGCCACTAGATGATGTAGGATTCACGCTCGTGGGACATGGTACGCAATTCAGCGTCCAAAGCAGCACTGCCATGGAAACAGTGTATCGTATTAAAGCCGGAGGACAAGAAATCCCACCACAAAACGACACCGGTTTGTTCAGGGGTTGGGCTGACGAACAAGGCTATTTTATCAAACACAATCCAAGGAATGATGATCTACCAGCTGACTTGGATGGGAAAATGAACATAACAGTGAATCCCGATTACTTGGCACCAAAGGAACTGTTCAGAACAGCGCGTAGCATGGGCAGAAACGCCACTCTGAACAAAATGAGCAACCTCACTTGGGAGTTCCCCGTTGATGCTGGCTTCACTTACGTTCTCAGGCTCCACTTCTGCGAGCTTGATCCCAATATTAATGACATCGGTAACAGGCAGTTCCACATTTACATAGCAAGCATGTTGGCTGACGACCGTGCAGATGTAATGAAATGGAGTCAGAAACAAAAAGGTCTAGCTGTGCTCAGAAACTACGCAGTTTTGATTCCCAACAATGGGACTCAGAAAAAGTTTAATCTCTCGCTTCAAATGCACCCTTACGGAAGCAGTGTCGATTCGAAATACGCAGACGCCTTCCTGAACGGTCTCGAGATCTTCAAAATCAATACAAACAACCTCGCCGGACCCAACCCGGACCCGGTCCAGACTCCAGAGAACAGCATCCCCGGAAAGCCCGGCAGAGAAAGCAGAACGACGATAATTGATGTCGTCGTAGGGGTTGGAATCGGGGTCGTTTTTATCTCCCTTGTGATTTTGGTTGTTGTCTTGAGATGCAAGAGAGTCACCGAAAGGAATTCCAAGGATTACAAATCCAAGTCGATCACAGCCACACAGAAGGTTTTCCTACCGTCCGATCTCTGCCGCCACTTCTCCCTGGATGAGATCGAAGCTGCCACCAATAACTTCGACGATGTCTTCATCGTTGGCGTCGGGGGATTCGGTCACGTGTACAAGGGTTACATCGACGACGGTTTCACCCCGGTCGCAATCAAGCGCCTGAAACCGGGTTCTCAGCAGGGTGTGCACGAGTTCTTGAACGAGATCGAGATGTTATCGCAGCTCCGCCATCTTCATCTAGTTTCCCTAATCGGATACTGCAACGAGATGAACGAGATGATACTGGTCTACGATTTCATGGCGCGTGGCACCCTACGCGATCATCTCTACAACACCGATAACCCCCCTCTCTCGTGGAAGCAGCGCTTGCAGATATGCATCGGCGCCGCGCGTGGGCTGCACTATCTCCACACAGGCGGGAAGCACACGATCATCCACCGCGATGTCAAAACGACGAACATCTTGTTAGATGATAAGTGGATGGCGAAGGTTTCAGACTTTGGTCTTTCAAGAATTGGGCCTACAGACACAGACAAGTCCCACGTGAGTACCCATGTGAAGGGAAGCTTTGGCTACATAGATCCCGAGTATTACAAACGATTTCGCTTAACGGAAAAGTCTGATGTTTTCTCGTTCGGGGTTGTGCTCTTTGAGATACTGTGTGGTCGTCCAGCTTTGATTCACAGTGCGGAGACGCAACAGGTGTCGCTTTCTAATTGGGTGAAACATTGTGATCGAAATGGGAGCATAGCAGAGATTGTGGATCCCACGATAAAGACAAAGATTGCGCCTGAGTGCCTGAAGAAGTTTTGTGAGATTGGGATGAATTGTTTGTTGGAAGATGGAACGCAGAGGCCGCGCATGAAGGATGTGGTTGCAATGCTGGAGTTTACGCTCCGGCTACAAGAAAGTGCAGAGCAACCGGCAATTGAAAAAGGAGAGAAAATTAGTGAGGATAGCTTTTCTACTACTGACTTGAACGTGACTACTACGACTTCGACCAGTGAAGACAATAGCTATAGTAATGATACGGTGTCGTCTTGGACTCCTTTCTCCGAAATTATTGATCCAAAGCCGCGTTGA 1983 0.4851 MPTDLYYTPLDDVGFTLVGHGTQFSVQSSTAMETVYRIKAGGQEIPPQNDTGLFRGWADEQGYFIKHNPRNDDLPADLDGKMNITVNPDYLAPKELFRTARSMGRNATLNKMSNLTWEFPVDAGFTYVLRLHFCELDPNINDIGNRQFHIYIASMLADDRADVMKWSQKQKGLAVLRNYAVLIPNNGTQKKFNLSLQMHPYGSSVDSKYADAFLNGLEIFKINTNNLAGPNPDPVQTPENSIPGKPGRESRTTIIDVVVGVGIGVVFISLVILVVVLRCKRVTERNSKDYKSKSITATQKVFLPSDLCRHFSLDEIEAATNNFDDVFIVGVGGFGHVYKGYIDDGFTPVAIKRLKPGSQQGVHEFLNEIEMLSQLRHLHLVSLIGYCNEMNEMILVYDFMARGTLRDHLYNTDNPPLSWKQRLQICIGAARGLHYLHTGGKHTIIHRDVKTTNILLDDKWMAKVSDFGLSRIGPTDTDKSHVSTHVKGSFGYIDPEYYKRFRLTEKSDVFSFGVVLFEILCGRPALIHSAETQQVSLSNWVKHCDRNGSIAEIVDPTIKTKIAPECLKKFCEIGMNCLLEDGTQRPRMKDVVAMLEFTLRLQESAEQPAIEKGEKISEDSFSTTDLNVTTTTSTSEDNSYSNDTVSSWTPFSEIIDPKPR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00820 660 MobiDBLite consensus disorder prediction 620 651 - -
Viun4g00820 660 SMART serkin_6 323 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00820 660 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Viun4g00820 660 ProSiteProfiles Protein kinase domain profile. 323 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00820 660 MobiDBLite consensus disorder prediction 606 660 - -
Viun4g00820 660 CDD STKc_IRAK 329 596 - -
Viun4g00820 660 FunFam Receptor-like protein kinase FERONIA 400 617 - -
Viun4g00820 660 Gene3D Transferase(Phosphotransferase) domain 1 400 622 - -
Viun4g00820 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Viun4g00820 660 Pfam Malectin-like domain 27 222 IPR024788 -
Viun4g00820 660 PANTHER OS07G0166700 PROTEIN 307 602 IPR045272 GO:0004714|GO:0006468
Viun4g00820 660 Gene3D Phosphorylase Kinase; domain 1 281 399 - -
Viun4g00820 660 Pfam Protein tyrosine and serine/threonine kinase 329 595 IPR001245 GO:0004672|GO:0006468
Viun4g00820 660 Gene3D - 30 224 - -
Viun4g00820 660 FunFam FERONIA receptor-like kinase 30 223 - -
Viun4g00820 660 SUPERFAMILY Protein kinase-like (PK-like) 299 598 IPR011009 -
Viun4g00820 660 FunFam Receptor-like protein kinase FERONIA 295 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00820 Viun-Chr4 6487628 6490064 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00820 1 660 Receptor kinase-like Gene Family AT3G51550 47.566 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun4g00820 PK_Tyr_Ser-Thr 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00820 - - gmx:100799780 916.761