Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00818 ATGGACAGGGTACTCGTCTCGGTCTCGTGTGCTGGTTTCGTCCTTCCTCAGTGGGCAAGATCCAAGTTCAATCCACGCTCACAAAACCTGTCAATCAACACGCTTATCTGTCAGCGATTTTCCATCGCCGAGATCAAATCCGCCACAAACAACTTCGACGACGCTTCCGTCGTCGGCGTCGGGGGATTCGGCAATGTTTACAGGGGCTTAATCCGCAGAATTTTCATCCCGGGATCTCAGAAACACTTCAATCCAGGTTCGAATGGCGCTAAAAAGTTCCCGGGCAAGATGGAGGTGGCTATCAAGCGCCACAAACCGGGTTCAAAGCAGGGCGCTGAAGAGTTTCTGAACGAGATCGAAATGCTCTCGCAGCTCCGGCATCGCAATCTCGTTCTACTCATTGGTTACTGCAACAGCAAGAAGGAGATGATCCTGGTCTATAATTTCATGGCGCGTGGCAACCTCCGTGACCATCTCTACAACAGCAACAAACCTTCCATGCCATGGAAGCGACGCTTGCAAATCTGTATAGACGTTGCTCACGCGCTTCATTATCTTCACAGTTGCGCCAATAAATACACGATAATCCACAGTGATGTGAAAACCACGAACATCTTGTTGGACGAGGAGTGGGTGGCCAAGGTATCAGACTTCGGGCTTTCAAGAATTGGGCCCAGGGAATCCAAGGCCCATGTCTGCGTCACCGCTATGAAGGGTAGCTTCGGGTATATAGATCCAGAATATTATAAACGACAACATTTGACGGAAAAGTCTGACGTGTACTCTTTTGGAATTGTTTTATTTGAGGTACTGTGCGCTCGCCCGCCTCTGATTCACACCACAGATCCGAGACAAGAGTCGCTCGGTAATTGGGTTAGGTACTGTTACCAAAATGGAACCATGGCAGAAATAATGGACCCCACGTTGAATGGGAAGATTGCGCCTAAATGCTTTAGAATGTTTTGCGAGATTGGGGTGAGTTGTTTATCAGAAATTGGGACGCAGAGACCGTCTATGCACGACGTCGTTTGGGTGCTAGGGAACGCCCTGCAACTACAAGAAAAGGCAGAAATTAGTGTGGCGCATTCTAGTAGCAAACATTTATTGTCTAGTTAG 1116 0.4857 MDRVLVSVSCAGFVLPQWARSKFNPRSQNLSINTLICQRFSIAEIKSATNNFDDASVVGVGGFGNVYRGLIRRIFIPGSQKHFNPGSNGAKKFPGKMEVAIKRHKPGSKQGAEEFLNEIEMLSQLRHRNLVLLIGYCNSKKEMILVYNFMARGNLRDHLYNSNKPSMPWKRRLQICIDVAHALHYLHSCANKYTIIHSDVKTTNILLDEEWVAKVSDFGLSRIGPRESKAHVCVTAMKGSFGYIDPEYYKRQHLTEKSDVYSFGIVLFEVLCARPPLIHTTDPRQESLGNWVRYCYQNGTMAEIMDPTLNGKIAPKCFRMFCEIGVSCLSEIGTQRPSMHDVVWVLGNALQLQEKAEISVAHSSSKHLLSS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00818 371 Gene3D Phosphorylase Kinase; domain 1 16 149 - -
Viun4g00818 371 PANTHER OS07G0166700 PROTEIN 36 353 IPR045272 GO:0004714|GO:0006468
Viun4g00818 371 SMART serkin_6 52 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00818 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Viun4g00818 371 Gene3D Transferase(Phosphotransferase) domain 1 150 368 - -
Viun4g00818 371 Pfam Protein tyrosine and serine/threonine kinase 57 343 IPR001245 GO:0004672|GO:0006468
Viun4g00818 371 SUPERFAMILY Protein kinase-like (PK-like) 37 345 IPR011009 -
Viun4g00818 371 FunFam Receptor-like protein kinase FERONIA 150 367 - -
Viun4g00818 371 ProSiteProfiles Protein kinase domain profile. 52 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00818 Viun-Chr4 6470871 6472774 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00818 31 357 Receptor kinase-like Gene Family AT3G51550 57.492 2.14e-126 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun4g00818 PK_Tyr_Ser-Thr 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00818 - - vun:114181146 761.525