Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00790 ATGTTTTCTTCTTCTTCTTCTTCTCATTGCAGTTCAGTGATCAAATGGAGTTCCCTAGAGAAGTTTCTCTTCTTCGTGGTTCTGTTCTTGTGGCGAAGCGACGCCGTATTGGCGGATTCGGACGAATCCGCTCTCCTTCGCCTGAAGGCATCGTTCTCCGACCCCGCCGGCGTACTCTCCACATGGACCTCTGCAGACGGCGCTGACTCTGGCTACTGCTCCTGGTCCGGCGTCCTCTGCAACGCAAACTCTCGGGTGGTCGCCGTCAACGTCACCGGAAACGGCGGCAGCCTCGGCAACGGAACCTCTCACCCGTGCACAGGTTTCTCTCAATTCCCCCTTTACGGATTCGGAGTTCGGCGAACGTGCAAAGGTAGTAAAGGTTCTCTCTTTGGAAACATTTCTTCTTTTAATTTCATCAGTGAGCTCACAGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCTGAAGCAATTTGGGGCATGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAATCTGATAACTGGATATCTTCCCTTTAGAATTAACGGCTTGAGGAAGTTGAGGGTTCTGAATCTTGGGTTTAATAGGATTGTAGGGGAGATTCCTAGTTCAATTTCGTCTCTTGAGAGTTTGGAGGTTTTGAATTTGTCTGGTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAGCATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCGGTGAGTTTAGGGAATTGTGAGAGGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGGGTATTCCTAGTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTGTCCAGGAACACTCTCAGTGGTTCTGTGCCTGGAGAGCTTGGGAATTGCTCGGAGTTGTCAGTCCTTGTGCTGTCAAATCTCTTTGATCCACGCGGGGATGTCGCTGGTGATTTTGGGAAATTGGGTTCGGTGAATGATGAGCTGAATTATTTTGAAGGGTCAATGCCTGTGGAGGTTTTGTCGCTTCCAAACTTGAGGATATTATGGGCTCCCATGGTGAATCTAGAAGGCAGTTTTCAAGGGAACTGGGGTGGTTGTCAGAGCTTGGAAATGGTAAATTTGGCTCAGAATTTTTTCAGTGGGGAATTTCCGAACCGGCTTGGTGTCTGCAAGAGGCTGCATTTTCTTGATTTGAGTGGAAACAACCTTACTGGGGTTCTTTCTAAAGAACTTCGCGTTCCTTGTATGAGCACGTTTGATGTTAGCGGGAACATGTTATCTGGTTCAATTCCTGATTTCTCCAATATTGTTTGTCCCCCTGAACCTTCTTGGAATGTCAACCTGTTTGAAGATGGTAATGTTTCTCCACCATATGCATTCTTTTTTTTGTCAAAGGTTTGGGAGAATTCACTTTTCACAGCAATGGGGGGAGTTGGTATTTCGGTTGCTCACAACTTTGCTCGAAACAACTTCAATGGCATTCTGTCGTTACCTATGGCACGGGACAGGCTGGGGAAACAGAGCAGTTACACATTTCTGGTCGGTGAAAATAATCTTACTGAAGCATTTCCTACATATTTATTTGAGAAATGTCATGGATTAGATGCATTGCTTCTAAATGTCAGTTATAATAGGATATCTGGTCATATTCCTTCCAGTCTCAGTGGGATGTGCAGATCATTGGAATTTTTGGATGTGTCTGGAAATCAGCTTGCAGGACCAATTCCCGTTGATTTAGGGAATATGGTCTCCCTTGCATCGTTGAACCTCAGTAAGAATCAGTTAGAAGGTCAGATACCCACCAGCCTTGGCCAGATAAAGAATCTGAAGTTTCTTTCTTTGGCTGGTAATAAGTTAAATGGCTCAATTCCGACCAGCCTGGGGCAGTTGTACTCTTTGGAAATCTTGGACCTTTCTTCAAACTATCTTACTGGTGAGATTCCAAAGGCTATTGAGAACATGAGAAATCTAACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCACATTCCTGGTGGTTTGGCATATGTCACTACACTCTCAGCCTTCAATGTGTCTTTCAACAACTTATCTGGATCATTGCCTTCTAATAGTGGCTTGATTAAATGCAGCAGTGCTGTTGGGAATCCGTTTCTAAGTCCCTGCCGTGGAGTTTCTCTATCTGTGCCATCAGGAAGTCAACTAGGTCCTATTGATGGCAAACCTTATAATGCAGCAGCAGAACAAGCCCCTGTCAAGGACAGTGGGAATAGCTTGAGTTCCATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTACTTATAGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCAGGGTCCAGAGTTGTTGGTTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATCGGGGTCCCGTTGACATTTGAAAGTGTTGTTCAAGCCACAGGAAATTTCAATGCTGGCAACTGCATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCAGAGGTAGCACCAGGAGTACTGGTGGCAGTCAAACGACTGGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCTGAAACCAAAACCCTTGGGAGGCTTCATCATCCTAATCTTGTCACTCTGATTGGTTATCATGCATGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCTGGTGGGAATCTTGAAAAGTTCATTCAAGAGAGGTCCACAAGGGTCGTGGATTGGAGGATTCTTCACAAGATTGCATTGGACATAGCCCGTGCACTCGCCTATCTGCATGATCAGTGTGTTCCCCGAGTTCTTCACCGCGATGTGAAGCCCAGCAACATCTTGTTAGATGACGATTTCAATGCTTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACATCAGAGACACATGCCACCACTGGTGTAGCCGGAACATTTGGGTATGTTGCTCCTGAATATGCCATGACATGCCGTGTTTCTGACAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCTTTTGGAAATGGATTCAACATAGTGGCATGGGCATGCATGCTACTGAAGCAAGGAAGGGCAAATGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGATGATTTGGTAGAGGTTCTTCACTTGGCTATTGTCTGCACTGTTGACTCTCTCTCTACCAGACCTACTATGAAACAAGTTGTCAGAAGGCTTAAGCAGCTTCAACCCCCATCATGCTAG 3411 0.455 MFSSSSSSHCSSVIKWSSLEKFLFFVVLFLWRSDAVLADSDESALLRLKASFSDPAGVLSTWTSADGADSGYCSWSGVLCNANSRVVAVNVTGNGGSLGNGTSHPCTGFSQFPLYGFGVRRTCKGSKGSLFGNISSFNFISELTELRVLSLPFNALEGEIPEAIWGMEKLEVLDLEGNLITGYLPFRINGLRKLRVLNLGFNRIVGEIPSSISSLESLEVLNLSGNELNGSVPGFVGRLRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPVSLGNCERLRTLLLYSNLLEEGIPSELGKLKSLEVLDVSRNTLSGSVPGELGNCSELSVLVLSNLFDPRGDVAGDFGKLGSVNDELNYFEGSMPVEVLSLPNLRILWAPMVNLEGSFQGNWGGCQSLEMVNLAQNFFSGEFPNRLGVCKRLHFLDLSGNNLTGVLSKELRVPCMSTFDVSGNMLSGSIPDFSNIVCPPEPSWNVNLFEDGNVSPPYAFFFLSKVWENSLFTAMGGVGISVAHNFARNNFNGILSLPMARDRLGKQSSYTFLVGENNLTEAFPTYLFEKCHGLDALLLNVSYNRISGHIPSSLSGMCRSLEFLDVSGNQLAGPIPVDLGNMVSLASLNLSKNQLEGQIPTSLGQIKNLKFLSLAGNKLNGSIPTSLGQLYSLEILDLSSNYLTGEIPKAIENMRNLTDVLLNNNNLSGHIPGGLAYVTTLSAFNVSFNNLSGSLPSNSGLIKCSSAVGNPFLSPCRGVSLSVPSGSQLGPIDGKPYNAAAEQAPVKDSGNSLSSIEIASITSASAIVSVLIALIVLFFYTRKWKPGSRVVGSTRKEVTVFTDIGVPLTFESVVQATGNFNAGNCIGSGGFGATYKAEVAPGVLVAVKRLAVGRFQGVQQFHAETKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRVVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGDDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00790 1136 Gene3D Ribonuclease Inhibitor 37 240 IPR032675 -
Viun4g00790 1136 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 359 534 - -
Viun4g00790 1136 PRINTS Leucine-rich repeat signature 667 680 - -
Viun4g00790 1136 PRINTS Leucine-rich repeat signature 430 443 - -
Viun4g00790 1136 SUPERFAMILY L domain-like 366 743 - -
Viun4g00790 1136 ProSiteProfiles Protein kinase domain profile. 857 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00790 1136 Gene3D Phosphorylase Kinase; domain 1 822 932 - -
Viun4g00790 1136 Pfam Protein kinase domain 860 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00790 1136 SUPERFAMILY Protein kinase-like (PK-like) 839 1128 IPR011009 -
Viun4g00790 1136 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 933 1135 - -
Viun4g00790 1136 SUPERFAMILY L domain-like 40 344 - -
Viun4g00790 1136 SMART serkin_6 857 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00790 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 345 - -
Viun4g00790 1136 FunFam Leucine-rich repeat receptor protein kinase EMS1 564 661 - -
Viun4g00790 1136 SMART LRR_typ_2 143 167 IPR003591 -
Viun4g00790 1136 SMART LRR_typ_2 191 214 IPR003591 -
Viun4g00790 1136 SMART LRR_typ_2 215 237 IPR003591 -
Viun4g00790 1136 SMART LRR_typ_2 667 691 IPR003591 -
Viun4g00790 1136 SMART LRR_typ_2 619 643 IPR003591 -
Viun4g00790 1136 SMART LRR_typ_2 263 285 IPR003591 -
Viun4g00790 1136 SMART LRR_typ_2 309 333 IPR003591 -
Viun4g00790 1136 Pfam Leucine Rich Repeat 263 285 IPR001611 GO:0005515
Viun4g00790 1136 Pfam Leucine Rich Repeat 193 215 IPR001611 GO:0005515
Viun4g00790 1136 Pfam Leucine Rich Repeat 669 691 IPR001611 GO:0005515
Viun4g00790 1136 Pfam Leucine rich repeat N-terminal domain 38 81 IPR013210 -
Viun4g00790 1136 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 239 1130 - -
Viun4g00790 1136 CDD STKc_IRAK 863 1131 - -
Viun4g00790 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 977 989 IPR008271 GO:0004672|GO:0006468
Viun4g00790 1136 Gene3D Ribonuclease Inhibitor 241 345 IPR032675 -
Viun4g00790 1136 Gene3D Ribonuclease Inhibitor 519 758 IPR032675 -
Viun4g00790 1136 Gene3D Ribonuclease Inhibitor 350 482 IPR032675 -
Viun4g00790 1136 Gene3D Transferase(Phosphotransferase) domain 1 933 1133 - -
Viun4g00790 1136 FunFam Leucine-rich repeat receptor protein kinase EMS1 662 745 - -
Viun4g00790 1136 ProSitePatterns Protein kinases ATP-binding region signature. 863 885 IPR017441 GO:0005524
Viun4g00790 1136 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 821 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00790 Viun-Chr4 6125998 6129875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00790 35 1136 Receptor kinase-like Gene Family AT3G02130 63.636 0.0 1322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Viun4g00790 Pkinase 6.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00790 - - vum:124828178 1874.37