Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00789 ATGTTTTCTGCTTCTTCTCTTACTATCACTTTCTCTTCTTCTTCTTCTTCTCCTCCTCATCCTCCTTCTTCTTCTTCTCATTGTGGTTCAGTGATCAAAGGGAATTCCCTCATGCAATTTCTCTTCCTTGTCTTCGTGGTCCTTTTAACGTTGCAGAACGACGCCGTTGCGATCGATTCGGACAAATCCGCGCTCCTCCGTATGAAGGCGTCGTTGTCCGACCCCGCCGGCGTTCTCTCCACGTGGACCACCGCCGACGGTTCCGACAGTTCTCACTCCGGCCACTGCTACTGGTCTGGCGTCCTCTGCGACGCGAACTCCCGCGTCGTCGCCGTCAACGTCACCGGAAACGGCGCCAACCGAACCTCGCACCCGTGTTCCGATTCCTCTAAATTCCCCCTCTACGGTTTCGGAATTCGGCGAACATGCAAAGGTAGCAAAGGTTCTCTCTTTGGAAACGTTTCTTCTGTTGGTTTCAATTTCATCAGTGAGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATCCCCGAAGCAATTTGGGGCATGGAAAAGTTAGAGGTTCTCGATTTAGAAGGGAACTTGATAAGTGGCTATCTTCCCTTGAGAATTAACGGCTTGAGGAAGTTGAGGGTTCTGAATCTTGGGTTTAATAGGATTATTGGGGAGGTACCTAGTTCAATTGCGTCTCTTGAGAGTTTGGAGGTTCTGAATTTGGCTGGTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTCGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTTAGTGGGGTTGTTCCGCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAGCATTTGGATTTGTCGGGGAATTCTTTGGTTCAAGGGATTCCGGTGAGTTTAGGGAATTGTGAGAGGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGGGTATTCCTGGTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTGTCCAGGAACACTCTCAGTGGTTCTGTGCCTGGAGAGCTTGGGAATTGCTCGGAGTTGTCAGTCCTTGTGCTGTCAAATCTCTTTGATCCACGCGGGGATGTCGCCGGTGATTTTGGGAAATTGGGTTCGGTGAATGATGAGCTGAATTATTTTGAAGGGTCAATGCCTGTGGAGGTTTTGTCGCTTCCGAAGCTGAGGATATTGTGGGCTCCCATGGTGAATCTAGAAGGCAGTTTTCAAGGGAACTGGGGTGGTTGTCAGAGCTTGGAGATGGTAAATTTGGCTCAGAATTTTTTCAGTGGGGAATTTCCGAACCGGCTTGGTGTCTGCAAGAGGCTGCATTTTCTAGATTTAAGTGGAAACAACCTTACTGGGGTGCTTTCTAAAGAACTTCACGTTCCCTGTATGAGTGTTTTTGATGTTAGTGGGAACATGTTATCTGGCTCAGTTCCTGATTTCTCCAATACCGTTTGTCCCCCTGTTCCTTCTTGGAATGGAAACCTGTTTGAAGACGGGAATGTTTCCTCGCCATATGCCTCGTTTTTTTTGTCAATGGTTCATGAAAGATCTCTGTTTACATCAATGGGGGGAATTGGTACTTCTGTTGTTCACAACTTTGGGCAAAACAGCTTTACTGGCATTCAGTCGCTACCCCTACCTCATGACAGGCTGGGGAAGAAGAATGGTTACACGTTCCTTGTTGGTGGAAATATTCTTACAGGAACATTTCCTACATATTTATTTGAGAAATGTGATAGACTAGACGCATTCCTTTTAAATGCCAGTTATAATAATATATCTGGTCATATACCTTCCAACATCAGTCGAATGTGCAGATCATTGAAATTTTTGGACGTGTCTGGAAATCAACTTGCAGGACCTATTCCTGTTGATTTAGGGAACATTGTCTCCCTTGTATCGCTGAACCTCAGTAGGAATCAATTACAAGGTCAGATTCCTACCAGCCTTGGCCAGATGAAGAATCTGAAGTTTCTCTCTTTGGCTGGTAATAAGTTAAATGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTGGAAGTCTTTGACCTTTCTTCAAACTCTCTTACTGGTGAGATTCCAAAGGCTATTGAGAACATGAGAAATCTGACTGATGTTTTTCTCAATAACAACAATCTTTCTGGTCATATTCCTGATGGTTTGGCACATGTCACTTCGCTCTCAGTATTCAATGTGTCTTTCAACAACTTATCTGGATATTTGCCTTCCAACAGTGGCTTGTTTAAATGCAGCAGTGCTGTTGGGAATCCATACCTAAGTCCCTGCCGCGGAGTTTCTCTGGCTGTGCCATCAGGGAATCAGCCAGGGCCGATTGATAGCAACTCTTATAATTCGGAAACAGAGCAAGCTACTGGCAAGAAGAGTGGGACTGACTTCAGTTCTATCGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTACTCATAGCCCTGATTATTCTATTCTTTTACACACGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGCTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTTCCATTGACATTTGAAAGTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATCGGGAGTGGAGGTTTTGGGGCAACATACAAGGCTGAGATAGCATCAGGAATCCTTGTGGCAGTCAAACGACTCGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCGATGCCGAGATCAAGACCCTTGGGAGGCTTCATCATCCTAACCTTGTCACTCTGATTGGTTATCATGCTTGTGAAACAGAGATGTTTCTCATATACAACTATTTGCCAGGCGGTAATCTCGAAAAGTTTATCCATGAGAGATCCACGAGGGCTGTAGACTGGAGGATTCTTCACAAGATTGCATTGGACATTGCCCGAGCACTTGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGCGATGTCAAACCCAGCAACATCTTGTTGGATGACGATTTCAATGCTTATCTATCGGATTTTGGATTGGCTAGACTTCTGGGAACATCAGAGACACATGCCACCACTGGTGTAGCCGGAACATTTGGTTATGTTGCTCCTGAATATGCCATGACATGCCGTGTTTCTGACAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGCTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCTTTTGGAAATGGTTTCAACATAGTGGCATGGGCATGCATGCTACTGAAGCAAGGAAGGGCAAATGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGATGATTTGGTAGAGGTTCTTCACTTGGCTATTGTCTGCACTGTTGACTCTCTCTCTACCAGACCTACTATGAAACAAGTTGTCAGAAGGCTTAAGCAGCTTCAACCCCCATCATGCTAG 3477 0.459 MFSASSLTITFSSSSSSPPHPPSSSSHCGSVIKGNSLMQFLFLVFVVLLTLQNDAVAIDSDKSALLRMKASLSDPAGVLSTWTTADGSDSSHSGHCYWSGVLCDANSRVVAVNVTGNGANRTSHPCSDSSKFPLYGFGIRRTCKGSKGSLFGNVSSVGFNFISELTELRVLSLPFNALEGEIPEAIWGMEKLEVLDLEGNLISGYLPLRINGLRKLRVLNLGFNRIIGEVPSSIASLESLEVLNLAGNELNGSVPGFVGRLRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPVSLGNCERLRTLLLYSNLLEEGIPGELGKLKSLEVLDVSRNTLSGSVPGELGNCSELSVLVLSNLFDPRGDVAGDFGKLGSVNDELNYFEGSMPVEVLSLPKLRILWAPMVNLEGSFQGNWGGCQSLEMVNLAQNFFSGEFPNRLGVCKRLHFLDLSGNNLTGVLSKELHVPCMSVFDVSGNMLSGSVPDFSNTVCPPVPSWNGNLFEDGNVSSPYASFFLSMVHERSLFTSMGGIGTSVVHNFGQNSFTGIQSLPLPHDRLGKKNGYTFLVGGNILTGTFPTYLFEKCDRLDAFLLNASYNNISGHIPSNISRMCRSLKFLDVSGNQLAGPIPVDLGNIVSLVSLNLSRNQLQGQIPTSLGQMKNLKFLSLAGNKLNGSIPTSLGQLYSLEVFDLSSNSLTGEIPKAIENMRNLTDVFLNNNNLSGHIPDGLAHVTSLSVFNVSFNNLSGYLPSNSGLFKCSSAVGNPYLSPCRGVSLAVPSGNQPGPIDSNSYNSETEQATGKKSGTDFSSIEIASITSASAIVSVLIALIILFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFESVVQATGNFNAGNCIGSGGFGATYKAEIASGILVAVKRLAVGRFQGVQQFDAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIHERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGDDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00789 1158 Gene3D Phosphorylase Kinase; domain 1 842 954 - -
Viun4g00789 1158 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515
Viun4g00789 1158 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Viun4g00789 1158 SUPERFAMILY Protein kinase-like (PK-like) 861 1150 IPR011009 -
Viun4g00789 1158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 999 1011 IPR008271 GO:0004672|GO:0006468
Viun4g00789 1158 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 381 556 - -
Viun4g00789 1158 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 276 367 - -
Viun4g00789 1158 Gene3D Ribonuclease Inhibitor 527 773 IPR032675 -
Viun4g00789 1158 Gene3D Ribonuclease Inhibitor 262 367 IPR032675 -
Viun4g00789 1158 MobiDBLite consensus disorder prediction 1 28 - -
Viun4g00789 1158 FunFam Leucine-rich repeat receptor protein kinase EMS1 687 765 - -
Viun4g00789 1158 ProSiteProfiles Protein kinase domain profile. 879 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00789 1158 FunFam LRR receptor-like serine/threonine-protein kinase 615 686 - -
Viun4g00789 1158 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 843 954 - -
Viun4g00789 1158 Gene3D Ribonuclease Inhibitor 56 261 IPR032675 -
Viun4g00789 1158 Gene3D Ribonuclease Inhibitor 374 501 IPR032675 -
Viun4g00789 1158 Pfam Leucine rich repeat N-terminal domain 59 104 IPR013210 -
Viun4g00789 1158 SMART serkin_6 879 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00789 1158 CDD STKc_IRAK 885 1153 - -
Viun4g00789 1158 SUPERFAMILY L domain-like 58 366 - -
Viun4g00789 1158 Pfam Protein kinase domain 882 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00789 1158 MobiDBLite consensus disorder prediction 786 808 - -
Viun4g00789 1158 Gene3D Transferase(Phosphotransferase) domain 1 955 1155 - -
Viun4g00789 1158 ProSitePatterns Protein kinases ATP-binding region signature. 885 907 IPR017441 GO:0005524
Viun4g00789 1158 SMART LRR_typ_2 165 189 IPR003591 -
Viun4g00789 1158 SMART LRR_typ_2 237 259 IPR003591 -
Viun4g00789 1158 SMART LRR_typ_2 641 665 IPR003591 -
Viun4g00789 1158 SMART LRR_typ_2 713 736 IPR003591 -
Viun4g00789 1158 SMART LRR_typ_2 689 712 IPR003591 -
Viun4g00789 1158 SMART LRR_typ_2 213 236 IPR003591 -
Viun4g00789 1158 SMART LRR_typ_2 285 307 IPR003591 -
Viun4g00789 1158 SMART LRR_typ_2 737 763 IPR003591 -
Viun4g00789 1158 SMART LRR_typ_2 331 355 IPR003591 -
Viun4g00789 1158 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 955 1157 - -
Viun4g00789 1158 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 261 1152 - -
Viun4g00789 1158 Pfam Leucine rich repeat 643 702 IPR001611 GO:0005515
Viun4g00789 1158 SUPERFAMILY L domain-like 388 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00789 Viun-Chr4 6112232 6116019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00789 55 1158 Receptor kinase-like Gene Family AT3G02130 63.620 0.0 1334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Viun4g00789 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00789 - - vum:124828178 2120.89