Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00745 ATGGCAGAAGCATCCTCTGCCGGCTCCACCACCGCCGACCCTCCGCCACCAGTTACCAAAAGATGGGCTGACGAAGCGGACGAAGAAGCCGAAGAATCATCCACCGCCAGCTCCACCGCCATCGAAGCCTCTTCCGTCAACCTCGACGCATTAAAAATCGAAGACAAGGATGAGAACCCTCCCAAACTCTTGGATGACCCCGACGATTCTAGCATCCAAAAGGTTACCTCTGGAGACACGCCGTACACGTCGGCTTCGAAGTTCGAGGACCTGAACCTCTCGCCGGAGCTTCTGAAGGGGCTCTACGTGGAGATGAAGTTCGAGAAGCCAAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTCAACCCGCCGCACCGGGACCTCATCGCGCAGGCACACAACGGGTCTGGGAAGACCACGTGCTTCGTGCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCGCCGCAGGCTCTCTGTGTTTGCCCCACTCGTGAATTGGCTAATCAGAACATCGAGGTTCTCCGCAAGATGGGGAAGTACACCGGGATTGCGTCGGAGTGCGCTGTGCCGTCGGATAGCAATGCGCTCTCGATCGCGAAAAGAGCGCCGATTATGGCGCAGGTGGTGATCGGAACTCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCTCCAGGTTGAAGATTCTTGTTTTTGACGAGGCAGATCAAATGCTTGCGGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATACAAAAAGTCAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAAAGAAGATCATAATAAACTATTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAGTATAAGGTCTACTGTTCTGATGAACTTGCGAAGATTGAAGTGATAAAAGATTACATATTTGAGATAGGAGAGAATGTGGGGCAAACCATCATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCACTTGTTGACTTGGGTTATGAGGTTACATCTATACAAGGTGCTCTTGGTCATGACGAGAGGGAGAAAATTGTTAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCAACTGATCTTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCAATGAAACACACTGCCAGCTATACCCGTGAACCCGAGCCTGATTGTGAAGTGTATTTGCATAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAAGGTGCTGTATTTAACCTGATATGTGATGAAAAGGATGAAAGGCTCATGTCGAAGATTGAGAATCACTTCGGCACTCGTGTAGCTGAGGTGCGAGCACAAAGTGTGGAAGACTATAAACGTGCACTGAAGGAAGCCGGTTTACTGCAATGA 1485 0.4815 MAEASSAGSTTADPPPPVTKRWADEADEEAEESSTASSTAIEASSVNLDALKIEDKDENPPKLLDDPDDSSIQKVTSGDTPYTSASKFEDLNLSPELLKGLYVEMKFEKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNIEVLRKMGKYTGIASECAVPSDSNALSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGASRLKILVFDEADQMLAEDGFKDDSLRIMKEIQKVNSNCQVLLFSATFNDTVKNFVSRTVKEDHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDLGYEVTSIQGALGHDEREKIVKEFRDGLTQVLISTDLLARGFDQQQVNLVINYDLPMKHTASYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDEKDERLMSKIENHFGTRVAEVRAQSVEDYKRALKEAGLLQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00745 494 SMART ultradead3 106 311 IPR014001 -
Viun4g00745 494 Pfam DEAD/DEAH box helicase 112 283 IPR011545 GO:0003676|GO:0005524
Viun4g00745 494 MobiDBLite consensus disorder prediction 70 87 - -
Viun4g00745 494 Gene3D - 65 302 IPR027417 -
Viun4g00745 494 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 115 IPR014014 GO:0003724
Viun4g00745 494 Gene3D - 305 487 IPR027417 -
Viun4g00745 494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Viun4g00745 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 461 IPR027417 -
Viun4g00745 494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 484 IPR001650 -
Viun4g00745 494 CDD SF2_C_DEAD 308 452 - -
Viun4g00745 494 MobiDBLite consensus disorder prediction 49 69 - -
Viun4g00745 494 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 464 - -
Viun4g00745 494 MobiDBLite consensus disorder prediction 1 87 - -
Viun4g00745 494 CDD DEADc_DDX19_DDX25 93 296 - -
Viun4g00745 494 SMART helicmild6 350 443 IPR001650 -
Viun4g00745 494 Pfam Helicase conserved C-terminal domain 321 443 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00745 Viun-Chr4 5626627 5630037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00745 79 475 Eukaryotic Initiation Factors Gene Family AT1G72730 36.765 1.23e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00745 K18655 - gmx:100784739 776.933