Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00726 ATGGGTTGCATTAGCTCCAAAAATGTGGTTGCCAAAGCTTATTCTCCATCCCCATCGACGGTGAAAACTTCAGAGACGATTCGCGCTTCTAGCAAGGGCCGTTCTGGATTGACCATTTTGGATTCTAAAGGAAATGTAGATAATGAGAGGAACAACAACACCAACAAGTTTAAGAAAAATAGTTCAAAGAAGAGTAATGGATCTCTTAGCTTAAGGCAAGGGTTGGTTCACAGAAATGTGGAGGCTGAACAAAACGCTGTTGGTTGGCCTCCTTGGCTCACTGCTGTTGCAGCAGAAGCCATTCAAGGATGGATCCCTCTCAAAGCAGATTCTTTTCAAAAATTAGAAAAGATTGGTCAAGGTACATATAGTAGTGTGTTTCGAGCTCGTGAAGTTGAAACCGGAAAGTTGTTTGCTTTGAAAAAGGTGCGGTTTGACAATTTTCAACCTGAGAGTATTAGGTTTATGGCAAGAGAAATAACCATCCTTCGAAGACTTGATCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTCGTCTATCAAATAGCATATACCTCGTATTTGAATACATGGAACATGATCTAGCTGGTCTAGTGTCACGTCCTGAGATAGTATTCACTGAATCACAGATAAAATGTTACATGAGGCAACTTCTAAGTGGACTCGAGCATTGTCATATGCGTGGTATTATGCACAGAGACATCAAAGTATCAAATATCTTATTAAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGTACAAGTAACAAACATCCTTTGACAAGTCGTGTCGTGACTTTGTGGTATCGTCCTCCTGAACTATTGATGGGATCAACTAACTATGGAGTGTCAGTAGATCTATGGAGTGTTGGTTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGAAGAACTGAGGTTGAACAATTGCACAAAATTTTTAAGTTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGACCAAACTTCCTCATGCAACCATGTTTAAGCCTCAAACAAATTATGAAAGCTCTCTTCGAGAAAGATGTGCAGATTTTCCTGAAACTGCTATAAACCTACTTGAGACTTTATTATCCATTGACGCAAGCAATCGAGGAACTTCCTCATCTGCCTTAATGTCTGAGTATTTTAACACTAAGCCATACGCTTGTAACCCATCAAACCTTCCAAGATACCCACCGAGCAAAGAAATGGATGTAAAAGTTCAAGATGATTCATCCAGGAAAAAGATTGAAGGCAAAGTGAGAGAGGTTGCAACATCAAGAAGACAACCAAGACGAGTCAATAAAGTTTTGCATGATCAAAACAATTTTGGTAAATCAAGTTCAAAAGAGAGCATGCAAAATATTTCCCAAAATGGTCATAAAGATGATGGTAAAACACATGTTACAAAAGGAAAAGGAGGAGGCATGTACAAAGAGCACACAAAGCCTGCAATGGATACCATGTCTGAGACCTCCCAAGTGATGAATGTTGTTAATGGTAATGGATACAGTGTGCCAGTACAAGTCTCAGGATCTACTAATGATTATACATGGGTAAAAAGAAGAAAACAAGATGCATCATCAACTTTATCAGATGGATCAAGAAGCAAAATTAGTGCACTAGATCCCAACTTTGCCAAAGGAACATATGATTTAACTAACCAAAGGGTTTCAATGGATTTTGATCCTGCTGAATTGGTGAATGCTCAGGGTCGTAGAGAACATGATGCACAACGTGCAATTCGTAAATCGAGATTTGGAAGAGATAAATGA 1815 0.3906 MGCISSKNVVAKAYSPSPSTVKTSETIRASSKGRSGLTILDSKGNVDNERNNNTNKFKKNSSKKSNGSLSLRQGLVHRNVEAEQNAVGWPPWLTAVAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKLFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPEIVFTESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTSNKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPETAINLLETLLSIDASNRGTSSSALMSEYFNTKPYACNPSNLPRYPPSKEMDVKVQDDSSRKKIEGKVREVATSRRQPRRVNKVLHDQNNFGKSSSKESMQNISQNGHKDDGKTHVTKGKGGGMYKEHTKPAMDTMSETSQVMNVVNGNGYSVPVQVSGSTNDYTWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTNQRVSMDFDPAELVNAQGRREHDAQRAIRKSRFGRDK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00726 604 CDD STKc_CDK9_like 112 396 - -
Viun4g00726 604 MobiDBLite consensus disorder prediction 474 491 - -
Viun4g00726 604 MobiDBLite consensus disorder prediction 14 51 - -
Viun4g00726 604 MobiDBLite consensus disorder prediction 409 443 - -
Viun4g00726 604 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00726 604 MobiDBLite consensus disorder prediction 455 473 - -
Viun4g00726 604 PANTHER CELL DIVISION PROTEIN KINASE 110 400 - -
Viun4g00726 604 ProSiteProfiles Protein kinase domain profile. 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00726 604 MobiDBLite consensus disorder prediction 14 69 - -
Viun4g00726 604 MobiDBLite consensus disorder prediction 455 491 - -
Viun4g00726 604 FunFam probable serine/threonine-protein kinase At1g54610 99 194 - -
Viun4g00726 604 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Viun4g00726 604 Pfam Protein kinase domain 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00726 604 Gene3D Transferase(Phosphotransferase) domain 1 195 436 - -
Viun4g00726 604 Gene3D Phosphorylase Kinase; domain 1 99 194 - -
Viun4g00726 604 SUPERFAMILY Protein kinase-like (PK-like) 106 401 IPR011009 -
Viun4g00726 604 MobiDBLite consensus disorder prediction 416 443 - -
Viun4g00726 604 MobiDBLite consensus disorder prediction 581 604 - -
Viun4g00726 604 FunFam probable serine/threonine-protein kinase At1g54610 195 435 - -
Viun4g00726 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00726 Viun-Chr4 5471684 5478177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00726 104 436 Core Cell Cycle Gene Families AT5G10270 47.278 2.05e-108 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Viun4g00726 Pkinase 1.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00726 - - gmx:100790917 947.192